GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 1 v 10 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_10_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_10_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_10_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_10_human_up.

Results found

Linked to

	Label	Description
	BAIAP2-DT Gene (Entity type)	ENSG00000226137 - BAIAP2 divergent transcript
	DUBR Gene (Entity type)	ENSG00000243701 - DPPA2 upstream binding RNA
	TRIM15 Gene (Entity type)	ENSG00000204610 - tripartite motif containing 15
	NKILA Gene (Entity type)	ENSG00000278709 - NF-kappaB interacting lncRNA
	GAS6-DT Gene (Entity type)	ENSG00000272695 - GAS6 divergent transcript
	PCAT7 Gene (Entity type)	ENSG00000231806 - prostate cancer associated transcript 7
	C6orf47 Gene (Entity type)	ENSG00000204439 - chromosome 6 open reading frame 47
	H1-9P Gene (Entity type)	ENSG00000253730 - H1.9 linker histone, pseudogene
	LINC02273 Gene (Entity type)	ENSG00000245954 - long intergenic non-protein coding RNA 2273
	ACTG1P25 Gene (Entity type)	ENSG00000293264 - actin gamma 1 pseudogene 25

BAIAP2-DT

Gene (Entity type)

ENSG00000226137 - BAIAP2 divergent transcript

DUBR

Gene (Entity type)

ENSG00000243701 - DPPA2 upstream binding RNA

TRIM15

Gene (Entity type)

ENSG00000204610 - tripartite motif containing 15

NKILA

Gene (Entity type)

ENSG00000278709 - NF-kappaB interacting lncRNA

GAS6-DT

Gene (Entity type)

ENSG00000272695 - GAS6 divergent transcript

PCAT7

Gene (Entity type)

ENSG00000231806 - prostate cancer associated transcript 7

C6orf47

Gene (Entity type)

ENSG00000204439 - chromosome 6 open reading frame 47

H1-9P

Gene (Entity type)

ENSG00000253730 - H1.9 linker histone, pseudogene

LINC02273

Gene (Entity type)

ENSG00000245954 - long intergenic non-protein coding RNA 2273

ACTG1P25

Gene (Entity type)

ENSG00000293264 - actin gamma 1 pseudogene 25

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.