GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 1 v 10 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_10_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_10_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_10_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_1_v_10_human_up.

Results found

Linked to

	Label	Description
	OXSR1 Gene (Entity type)	ENSG00000172939 - oxidative stress responsive kinase 1
	GRB2 Gene (Entity type)	ENSG00000177885 - growth factor receptor bound protein 2
	MEGF9 Gene (Entity type)	ENSG00000106780 - multiple EGF like domains 9
	MAP2K3 Gene (Entity type)	ENSG00000034152 - mitogen-activated protein kinase kinase 3
	THRA Gene (Entity type)	ENSG00000126351 - thyroid hormone receptor alpha
	SLC35A3 Gene (Entity type)	ENSG00000117620 - solute carrier family 35 member A3
	PSEN1 Gene (Entity type)	ENSG00000080815 - presenilin 1
	CDK7 Gene (Entity type)	ENSG00000134058 - cyclin dependent kinase 7
	TNFSF9 Gene (Entity type)	ENSG00000125657 - TNF superfamily member 9
	DNAJC5 Gene (Entity type)	ENSG00000101152 - DnaJ heat shock protein family (Hsp40) member C5

OXSR1

Gene (Entity type)

ENSG00000172939 - oxidative stress responsive kinase 1

GRB2

Gene (Entity type)

ENSG00000177885 - growth factor receptor bound protein 2

MEGF9

Gene (Entity type)

ENSG00000106780 - multiple EGF like domains 9

MAP2K3

Gene (Entity type)

ENSG00000034152 - mitogen-activated protein kinase kinase 3

THRA

Gene (Entity type)

ENSG00000126351 - thyroid hormone receptor alpha

SLC35A3

Gene (Entity type)

ENSG00000117620 - solute carrier family 35 member A3

PSEN1

Gene (Entity type)

ENSG00000080815 - presenilin 1

CDK7

Gene (Entity type)

ENSG00000134058 - cyclin dependent kinase 7

TNFSF9

Gene (Entity type)

ENSG00000125657 - TNF superfamily member 9

DNAJC5

Gene (Entity type)

ENSG00000101152 - DnaJ heat shock protein family (Hsp40) member C5

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.