VSIR Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with VSIR Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with VSIR Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with VSIR Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with VSIR Up.

Results found

Linked to

	Label	Description
	DAP Gene (Entity type)	ENSG00000112977 - death associated protein
	PIGB Gene (Entity type)	ENSG00000069943 - phosphatidylinositol glycan anchor biosynthesis class B
	RNPEP Gene (Entity type)	ENSG00000176393 - arginyl aminopeptidase
	DICER1 Gene (Entity type)	ENSG00000100697 - dicer 1, ribonuclease III
	RAB1A Gene (Entity type)	ENSG00000138069 - RAB1A, member RAS oncogene family
	BCAT2 Gene (Entity type)	ENSG00000105552 - branched chain amino acid transaminase 2
	SMCHD1 Gene (Entity type)	ENSG00000101596 - structural maintenance of chromosomes flexible hinge domain containing 1
	PCGF3 Gene (Entity type)	ENSG00000185619 - polycomb group ring finger 3
	NARS2 Gene (Entity type)	ENSG00000137513 - asparaginyl-tRNA synthetase 2, mitochondrial
	ALPL Gene (Entity type)	ENSG00000162551 - alkaline phosphatase, biomineralization associated

DAP

Gene (Entity type)

ENSG00000112977 - death associated protein

PIGB

Gene (Entity type)

ENSG00000069943 - phosphatidylinositol glycan anchor biosynthesis class B

RNPEP

Gene (Entity type)

ENSG00000176393 - arginyl aminopeptidase

DICER1

Gene (Entity type)

ENSG00000100697 - dicer 1, ribonuclease III

RAB1A

Gene (Entity type)

ENSG00000138069 - RAB1A, member RAS oncogene family

BCAT2

Gene (Entity type)

ENSG00000105552 - branched chain amino acid transaminase 2

SMCHD1

Gene (Entity type)

ENSG00000101596 - structural maintenance of chromosomes flexible hinge domain containing 1

PCGF3

Gene (Entity type)

ENSG00000185619 - polycomb group ring finger 3

NARS2

Gene (Entity type)

ENSG00000137513 - asparaginyl-tRNA synthetase 2, mitochondrial

ALPL

Gene (Entity type)

ENSG00000162551 - alkaline phosphatase, biomineralization associated

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CFDE Workbench

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.