PDGFD Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with PDGFD Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with PDGFD Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with PDGFD Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with PDGFD Up.

Results found

Linked to

	Label	Description
	USP47 Gene (Entity type)	ENSG00000170242 - ubiquitin specific peptidase 47
	PPM1B Gene (Entity type)	ENSG00000138032 - protein phosphatase, Mg2+/Mn2+ dependent 1B
	CDK5R1 Gene (Entity type)	ENSG00000176749 - cyclin dependent kinase 5 regulatory subunit 1
	ARFGEF1 Gene (Entity type)	ENSG00000066777 - ARF guanine nucleotide exchange factor 1
	THOC2 Gene (Entity type)	ENSG00000125676 - THO complex subunit 2
	UPF3A Gene (Entity type)	ENSG00000169062 - UPF3A regulator of nonsense mediated mRNA decay
	RAB2A Gene (Entity type)	ENSG00000104388 - RAB2A, member RAS oncogene family
	LRP1 Gene (Entity type)	ENSG00000123384 - LDL receptor related protein 1
	RUFY2 Gene (Entity type)	ENSG00000204130 - RUN and FYVE domain containing 2
	AXIN1 Gene (Entity type)	ENSG00000103126 - axin 1

USP47

Gene (Entity type)

ENSG00000170242 - ubiquitin specific peptidase 47

PPM1B

Gene (Entity type)

ENSG00000138032 - protein phosphatase, Mg2+/Mn2+ dependent 1B

CDK5R1

Gene (Entity type)

ENSG00000176749 - cyclin dependent kinase 5 regulatory subunit 1

ARFGEF1

Gene (Entity type)

ENSG00000066777 - ARF guanine nucleotide exchange factor 1

THOC2

Gene (Entity type)

ENSG00000125676 - THO complex subunit 2

UPF3A

Gene (Entity type)

ENSG00000169062 - UPF3A regulator of nonsense mediated mRNA decay

RAB2A

Gene (Entity type)

ENSG00000104388 - RAB2A, member RAS oncogene family

LRP1

Gene (Entity type)

ENSG00000123384 - LDL receptor related protein 1

RUFY2

Gene (Entity type)

ENSG00000204130 - RUN and FYVE domain containing 2

AXIN1

Gene (Entity type)

ENSG00000103126 - axin 1

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.