SPRED2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SPRED2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SPRED2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SPRED2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SPRED2 Up.

Results found

Linked to

	Label	Description
	PLOD3 Gene (Entity type)	ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
	ZNF706 Gene (Entity type)	ENSG00000120963 - zinc finger protein 706
	CTNND2 Gene (Entity type)	ENSG00000169862 - catenin delta 2
	TAF9 Gene (Entity type)	ENSG00000273841 - TATA-box binding protein associated factor 9
	GLRX2 Gene (Entity type)	ENSG00000023572 - glutaredoxin 2
	RND1 Gene (Entity type)	ENSG00000172602 - Rho family GTPase 1
	SIL1 Gene (Entity type)	ENSG00000120725 - SIL1 nucleotide exchange factor
	DR1 Gene (Entity type)	ENSG00000117505 - down-regulator of transcription 1
	GPATCH2 Gene (Entity type)	ENSG00000092978 - G-patch domain containing 2

PLOD3

Gene (Entity type)

ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

ZNF706

Gene (Entity type)

ENSG00000120963 - zinc finger protein 706

CTNND2

Gene (Entity type)

ENSG00000169862 - catenin delta 2

TAF9

Gene (Entity type)

ENSG00000273841 - TATA-box binding protein associated factor 9

GLRX2

Gene (Entity type)

ENSG00000023572 - glutaredoxin 2

RND1

Gene (Entity type)

ENSG00000172602 - Rho family GTPase 1

SIL1

Gene (Entity type)

ENSG00000120725 - SIL1 nucleotide exchange factor

DR1

Gene (Entity type)

ENSG00000117505 - down-regulator of transcription 1

GPATCH2

Gene (Entity type)

ENSG00000092978 - G-patch domain containing 2

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.