RNPEP Down (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with RNPEP Down.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with RNPEP Down.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with RNPEP Down.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with RNPEP Down.

Results found

Linked to

	Label	Description
	GALE Gene (Entity type)	ENSG00000117308 - UDP-galactose-4-epimerase
	CDC34 Gene (Entity type)	ENSG00000099804 - cell division cycle 34, ubiquitin conjugating enzyme
	CERS4 Gene (Entity type)	ENSG00000090661 - ceramide synthase 4
	AGPAT2 Gene (Entity type)	ENSG00000169692 - 1-acylglycerol-3-phosphate O-acyltransferase 2
	GTF2B Gene (Entity type)	ENSG00000137947 - general transcription factor IIB
	TRAFD1 Gene (Entity type)	ENSG00000135148 - TRAF-type zinc finger domain containing 1
	SGSM2 Gene (Entity type)	ENSG00000141258 - small G protein signaling modulator 2
	ZC3H11A Gene (Entity type)	ENSG00000058673 - zinc finger CCCH-type containing 11A
	SCGN Gene (Entity type)	ENSG00000079689 - secretagogin, EF-hand calcium binding protein
	SIGLEC1 Gene (Entity type)	ENSG00000088827 - sialic acid binding Ig like lectin 1

GALE

Gene (Entity type)

ENSG00000117308 - UDP-galactose-4-epimerase

CDC34

Gene (Entity type)

ENSG00000099804 - cell division cycle 34, ubiquitin conjugating enzyme

CERS4

Gene (Entity type)

ENSG00000090661 - ceramide synthase 4

AGPAT2

Gene (Entity type)

ENSG00000169692 - 1-acylglycerol-3-phosphate O-acyltransferase 2

GTF2B

Gene (Entity type)

ENSG00000137947 - general transcription factor IIB

TRAFD1

Gene (Entity type)

ENSG00000135148 - TRAF-type zinc finger domain containing 1

SGSM2

Gene (Entity type)

ENSG00000141258 - small G protein signaling modulator 2

ZC3H11A

Gene (Entity type)

ENSG00000058673 - zinc finger CCCH-type containing 11A

SCGN

Gene (Entity type)

ENSG00000079689 - secretagogin, EF-hand calcium binding protein

SIGLEC1

Gene (Entity type)

ENSG00000088827 - sialic acid binding Ig like lectin 1

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.