PDXP Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with PDXP Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with PDXP Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with PDXP Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with PDXP Up.

Results found

Linked to

	Label	Description
	ACADM Gene (Entity type)	ENSG00000117054 - acyl-CoA dehydrogenase medium chain
	NRAS Gene (Entity type)	ENSG00000213281 - NRAS proto-oncogene, GTPase
	ZMYND11 Gene (Entity type)	ENSG00000015171 - zinc finger MYND-type containing 11
	BICD2 Gene (Entity type)	ENSG00000185963 - BICD cargo adaptor 2
	UBP1 Gene (Entity type)	ENSG00000153560 - upstream binding protein 1
	PDSS1 Gene (Entity type)	ENSG00000148459 - decaprenyl diphosphate synthase subunit 1
	ATG5 Gene (Entity type)	ENSG00000057663 - autophagy related 5
	KCTD9 Gene (Entity type)	ENSG00000104756 - potassium channel tetramerization domain containing 9
	FBXO3 Gene (Entity type)	ENSG00000110429 - F-box protein 3
	MRPL42 Gene (Entity type)	ENSG00000198015 - mitochondrial ribosomal protein L42

ACADM

Gene (Entity type)

ENSG00000117054 - acyl-CoA dehydrogenase medium chain

NRAS

Gene (Entity type)

ENSG00000213281 - NRAS proto-oncogene, GTPase

ZMYND11

Gene (Entity type)

ENSG00000015171 - zinc finger MYND-type containing 11

BICD2

Gene (Entity type)

ENSG00000185963 - BICD cargo adaptor 2

UBP1

Gene (Entity type)

ENSG00000153560 - upstream binding protein 1

PDSS1

Gene (Entity type)

ENSG00000148459 - decaprenyl diphosphate synthase subunit 1

ATG5

Gene (Entity type)

ENSG00000057663 - autophagy related 5

KCTD9

Gene (Entity type)

ENSG00000104756 - potassium channel tetramerization domain containing 9

FBXO3

Gene (Entity type)

ENSG00000110429 - F-box protein 3

MRPL42

Gene (Entity type)

ENSG00000198015 - mitochondrial ribosomal protein L42

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.