GSE57871 GLI1 PSMD13 knockdown HCT 116 Vorinostat 6 v 2 human dn (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_6_v_2_human_dn.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_6_v_2_human_dn.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_6_v_2_human_dn.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE57871_GLI1_PSMD13 knockdown_HCT 116_Vorinostat_6_v_2_human_dn.

Results found

Linked to

	Label	Description
	BLVRA Gene (Entity type)	ENSG00000106605 - biliverdin reductase A
	CAT Gene (Entity type)	ENSG00000121691 - catalase
	EXT2 Gene (Entity type)	ENSG00000151348 - exostosin glycosyltransferase 2
	PLCG1 Gene (Entity type)	ENSG00000124181 - phospholipase C gamma 1
	GRB2 Gene (Entity type)	ENSG00000177885 - growth factor receptor bound protein 2
	PJA1 Gene (Entity type)	ENSG00000181191 - praja ring finger ubiquitin ligase 1
	HDAC5 Gene (Entity type)	ENSG00000108840 - histone deacetylase 5
	MEGF9 Gene (Entity type)	ENSG00000106780 - multiple EGF like domains 9
	TRIM24 Gene (Entity type)	ENSG00000122779 - tripartite motif containing 24
	MAP2K3 Gene (Entity type)	ENSG00000034152 - mitogen-activated protein kinase kinase 3

BLVRA

Gene (Entity type)

ENSG00000106605 - biliverdin reductase A

CAT

Gene (Entity type)

ENSG00000121691 - catalase

EXT2

Gene (Entity type)

ENSG00000151348 - exostosin glycosyltransferase 2

PLCG1

Gene (Entity type)

ENSG00000124181 - phospholipase C gamma 1

GRB2

Gene (Entity type)

ENSG00000177885 - growth factor receptor bound protein 2

PJA1

Gene (Entity type)

ENSG00000181191 - praja ring finger ubiquitin ligase 1

HDAC5

Gene (Entity type)

ENSG00000108840 - histone deacetylase 5

MEGF9

Gene (Entity type)

ENSG00000106780 - multiple EGF like domains 9

TRIM24

Gene (Entity type)

ENSG00000122779 - tripartite motif containing 24

MAP2K3

Gene (Entity type)

ENSG00000034152 - mitogen-activated protein kinase kinase 3

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.