NANOG Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with NANOG Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with NANOG Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with NANOG Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with NANOG Up.

Results found

Linked to

	Label	Description
	PUM1 Gene (Entity type)	ENSG00000134644 - pumilio RNA binding family member 1
	SULT1A2 Gene (Entity type)	ENSG00000197165 - sulfotransferase family 1A member 2
	SCCPDH Gene (Entity type)	ENSG00000143653 - saccharopine dehydrogenase (putative)
	STX16 Gene (Entity type)	ENSG00000124222 - syntaxin 16
	THOC2 Gene (Entity type)	ENSG00000125676 - THO complex subunit 2
	HELZ Gene (Entity type)	ENSG00000198265 - helicase with zinc finger
	BPTF Gene (Entity type)	ENSG00000171634 - bromodomain PHD finger transcription factor
	CARM1 Gene (Entity type)	ENSG00000142453 - coactivator associated arginine methyltransferase 1
	PPWD1 Gene (Entity type)	ENSG00000113593 - peptidylprolyl isomerase domain and WD repeat containing 1
	SRSF4 Gene (Entity type)	ENSG00000116350 - serine and arginine rich splicing factor 4

PUM1

Gene (Entity type)

ENSG00000134644 - pumilio RNA binding family member 1

SULT1A2

Gene (Entity type)

ENSG00000197165 - sulfotransferase family 1A member 2

SCCPDH

Gene (Entity type)

ENSG00000143653 - saccharopine dehydrogenase (putative)

STX16

Gene (Entity type)

ENSG00000124222 - syntaxin 16

THOC2

Gene (Entity type)

ENSG00000125676 - THO complex subunit 2

HELZ

Gene (Entity type)

ENSG00000198265 - helicase with zinc finger

BPTF

Gene (Entity type)

ENSG00000171634 - bromodomain PHD finger transcription factor

CARM1

Gene (Entity type)

ENSG00000142453 - coactivator associated arginine methyltransferase 1

PPWD1

Gene (Entity type)

ENSG00000113593 - peptidylprolyl isomerase domain and WD repeat containing 1

SRSF4

Gene (Entity type)

ENSG00000116350 - serine and arginine rich splicing factor 4

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.