CD99 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with CD99 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with CD99 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with CD99 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with CD99 Up.

Results found

Linked to

	Label	Description
	VPS4B Gene (Entity type)	ENSG00000119541 - vacuolar protein sorting 4 homolog B
	PLOD3 Gene (Entity type)	ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
	NUDC Gene (Entity type)	ENSG00000090273 - nuclear distribution C, dynein complex regulator
	PAPPA Gene (Entity type)	ENSG00000182752 - pappalysin 1
	CLDN5 Gene (Entity type)	ENSG00000184113 - claudin 5
	RUBCN Gene (Entity type)	ENSG00000145016 - rubicon autophagy regulator
	MAP7D1 Gene (Entity type)	ENSG00000116871 - MAP7 domain containing 1
	TULP3 Gene (Entity type)	ENSG00000078246 - TUB like protein 3
	TWF2 Gene (Entity type)	ENSG00000247596 - twinfilin actin binding protein 2
	UPK3B Gene (Entity type)	ENSG00000243566 - uroplakin 3B

VPS4B

Gene (Entity type)

ENSG00000119541 - vacuolar protein sorting 4 homolog B

PLOD3

Gene (Entity type)

ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

NUDC

Gene (Entity type)

ENSG00000090273 - nuclear distribution C, dynein complex regulator

PAPPA

Gene (Entity type)

ENSG00000182752 - pappalysin 1

CLDN5

Gene (Entity type)

ENSG00000184113 - claudin 5

RUBCN

Gene (Entity type)

ENSG00000145016 - rubicon autophagy regulator

MAP7D1

Gene (Entity type)

ENSG00000116871 - MAP7 domain containing 1

TULP3

Gene (Entity type)

ENSG00000078246 - TUB like protein 3

TWF2

Gene (Entity type)

ENSG00000247596 - twinfilin actin binding protein 2

UPK3B

Gene (Entity type)

ENSG00000243566 - uroplakin 3B

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.