GSE225869 CD44 knockdown 3 v 0 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE225869_CD44 knockdown_3_v_0_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE225869_CD44 knockdown_3_v_0_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE225869_CD44 knockdown_3_v_0_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE225869_CD44 knockdown_3_v_0_human_up.

Results found

Linked to

	Label	Description
	DDX52 Gene (Entity type)	ENSG00000278053 - DExD-box helicase 52
	TRIM16L Gene (Entity type)	ENSG00000291110 - tripartite motif containing 16 like (pseudogene)
	PVT1 Gene (Entity type)	ENSG00000249859 - Pvt1 oncogene
	LINC00205 Gene (Entity type)	ENSG00000223768 - long intergenic non-protein coding RNA 205
	OLMALINC Gene (Entity type)	ENSG00000235823 - oligodendrocyte maturation-associated long intergenic non-coding RNA
	LINC02910 Gene (Entity type)	ENSG00000228340 - long intergenic non-protein coding RNA 2910
	NOTCH2NLB Gene (Entity type)	ENSG00000286019 - notch 2 N-terminal like B
	MSANTD7 Gene (Entity type)	ENSG00000284024 - Myb/SANT DNA binding domain containing 7
	LOC645485 Gene (Entity type)	ENSG00000285517 - uncharacterized LOC645485
	LINC00707 Gene (Entity type)	ENSG00000223784 - long intergenic non-protein coding RNA 707

DDX52

Gene (Entity type)

ENSG00000278053 - DExD-box helicase 52

TRIM16L

Gene (Entity type)

ENSG00000291110 - tripartite motif containing 16 like (pseudogene)

PVT1

Gene (Entity type)

ENSG00000249859 - Pvt1 oncogene

LINC00205

Gene (Entity type)

ENSG00000223768 - long intergenic non-protein coding RNA 205

OLMALINC

Gene (Entity type)

ENSG00000235823 - oligodendrocyte maturation-associated long intergenic non-coding RNA

LINC02910

Gene (Entity type)

ENSG00000228340 - long intergenic non-protein coding RNA 2910

NOTCH2NLB

Gene (Entity type)

ENSG00000286019 - notch 2 N-terminal like B

MSANTD7

Gene (Entity type)

ENSG00000284024 - Myb/SANT DNA binding domain containing 7

LOC645485

Gene (Entity type)

ENSG00000285517 - uncharacterized LOC645485

LINC00707

Gene (Entity type)

ENSG00000223784 - long intergenic non-protein coding RNA 707

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.