GSE224004 GSE224005 CHD4 EWS-FLI1 knockdown 0 v 1 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE224004_GSE224005_CHD4_EWS-FLI1 knockdown_0_v_1_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE224004_GSE224005_CHD4_EWS-FLI1 knockdown_0_v_1_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE224004_GSE224005_CHD4_EWS-FLI1 knockdown_0_v_1_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE224004_GSE224005_CHD4_EWS-FLI1 knockdown_0_v_1_human_up.

Results found

Linked to

	Label	Description
	PLOD3 Gene (Entity type)	ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
	EXT2 Gene (Entity type)	ENSG00000151348 - exostosin glycosyltransferase 2
	ROCK2 Gene (Entity type)	ENSG00000134318 - Rho associated coiled-coil containing protein kinase 2
	HDAC5 Gene (Entity type)	ENSG00000108840 - histone deacetylase 5
	RBCK1 Gene (Entity type)	ENSG00000125826 - RANBP2-type and C3HC4-type zinc finger containing 1
	IMPA1 Gene (Entity type)	ENSG00000133731 - inositol monophosphatase 1
	MCCC1 Gene (Entity type)	ENSG00000078070 - methylcrotonyl-CoA carboxylase subunit 1
	CROT Gene (Entity type)	ENSG00000005469 - carnitine O-octanoyltransferase
	CD68 Gene (Entity type)	ENSG00000129226 - CD68 molecule
	GTF2H3 Gene (Entity type)	ENSG00000111358 - general transcription factor IIH subunit 3

PLOD3

Gene (Entity type)

ENSG00000106397 - procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

EXT2

Gene (Entity type)

ENSG00000151348 - exostosin glycosyltransferase 2

ROCK2

Gene (Entity type)

ENSG00000134318 - Rho associated coiled-coil containing protein kinase 2

HDAC5

Gene (Entity type)

ENSG00000108840 - histone deacetylase 5

RBCK1

Gene (Entity type)

ENSG00000125826 - RANBP2-type and C3HC4-type zinc finger containing 1

IMPA1

Gene (Entity type)

ENSG00000133731 - inositol monophosphatase 1

MCCC1

Gene (Entity type)

ENSG00000078070 - methylcrotonyl-CoA carboxylase subunit 1

CROT

Gene (Entity type)

ENSG00000005469 - carnitine O-octanoyltransferase

CD68

Gene (Entity type)

ENSG00000129226 - CD68 molecule

GTF2H3

Gene (Entity type)

ENSG00000111358 - general transcription factor IIH subunit 3

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.