RAI2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with RAI2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with RAI2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with RAI2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with RAI2 Up.

Results found

Linked to

	Label	Description
	CDR2 Gene (Entity type)	ENSG00000140743 - cerebellar degeneration related protein 2
	MED28 Gene (Entity type)	ENSG00000118579 - mediator complex subunit 28
	UVRAG Gene (Entity type)	ENSG00000198382 - UV radiation resistance associated
	PPME1 Gene (Entity type)	ENSG00000214517 - protein phosphatase methylesterase 1
	RARA Gene (Entity type)	ENSG00000131759 - retinoic acid receptor alpha
	NOP2 Gene (Entity type)	ENSG00000111641 - NOP2 nucleolar protein
	RPL29 Gene (Entity type)	ENSG00000162244 - ribosomal protein L29
	UFC1 Gene (Entity type)	ENSG00000143222 - ubiquitin-fold modifier conjugating enzyme 1
	DVL3 Gene (Entity type)	ENSG00000161202 - dishevelled segment polarity protein 3
	SERF2 Gene (Entity type)	ENSG00000140264 - small EDRK-rich factor 2

CDR2

Gene (Entity type)

ENSG00000140743 - cerebellar degeneration related protein 2

MED28

Gene (Entity type)

ENSG00000118579 - mediator complex subunit 28

UVRAG

Gene (Entity type)

ENSG00000198382 - UV radiation resistance associated

PPME1

Gene (Entity type)

ENSG00000214517 - protein phosphatase methylesterase 1

RARA

Gene (Entity type)

ENSG00000131759 - retinoic acid receptor alpha

NOP2

Gene (Entity type)

ENSG00000111641 - NOP2 nucleolar protein

RPL29

Gene (Entity type)

ENSG00000162244 - ribosomal protein L29

UFC1

Gene (Entity type)

ENSG00000143222 - ubiquitin-fold modifier conjugating enzyme 1

DVL3

Gene (Entity type)

ENSG00000161202 - dishevelled segment polarity protein 3

SERF2

Gene (Entity type)

ENSG00000140264 - small EDRK-rich factor 2

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.