SOBP Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SOBP Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SOBP Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SOBP Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SOBP Up.

Results found

Linked to

	Label	Description
	ACADM Gene (Entity type)	ENSG00000117054 - acyl-CoA dehydrogenase medium chain
	MED1 Gene (Entity type)	ENSG00000125686 - mediator complex subunit 1
	KYAT3 Gene (Entity type)	ENSG00000137944 - kynurenine aminotransferase 3
	CBR4 Gene (Entity type)	ENSG00000145439 - carbonyl reductase 4
	NOD2 Gene (Entity type)	ENSG00000167207 - nucleotide binding oligomerization domain containing 2
	RUFY2 Gene (Entity type)	ENSG00000204130 - RUN and FYVE domain containing 2
	EXTL2 Gene (Entity type)	ENSG00000162694 - exostosin like glycosyltransferase 2
	SLF2 Gene (Entity type)	ENSG00000119906 - SMC5/6 complex localization factor 2
	UPF3B Gene (Entity type)	ENSG00000125351 - UPF3B regulator of nonsense mediated mRNA decay
	GIMAP5 Gene (Entity type)	ENSG00000196329 - GTPase, IMAP family member 5

ACADM

Gene (Entity type)

ENSG00000117054 - acyl-CoA dehydrogenase medium chain

MED1

Gene (Entity type)

ENSG00000125686 - mediator complex subunit 1

KYAT3

Gene (Entity type)

ENSG00000137944 - kynurenine aminotransferase 3

CBR4

Gene (Entity type)

ENSG00000145439 - carbonyl reductase 4

NOD2

Gene (Entity type)

ENSG00000167207 - nucleotide binding oligomerization domain containing 2

RUFY2

Gene (Entity type)

ENSG00000204130 - RUN and FYVE domain containing 2

EXTL2

Gene (Entity type)

ENSG00000162694 - exostosin like glycosyltransferase 2

SLF2

Gene (Entity type)

ENSG00000119906 - SMC5/6 complex localization factor 2

UPF3B

Gene (Entity type)

ENSG00000125351 - UPF3B regulator of nonsense mediated mRNA decay

GIMAP5

Gene (Entity type)

ENSG00000196329 - GTPase, IMAP family member 5

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.