RAMP3 Down (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with RAMP3 Down.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with RAMP3 Down.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with RAMP3 Down.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with RAMP3 Down.

Results found

Linked to

	Label	Description
	ACADM Gene (Entity type)	ENSG00000117054 - acyl-CoA dehydrogenase medium chain
	BCAT2 Gene (Entity type)	ENSG00000105552 - branched chain amino acid transaminase 2
	YEATS4 Gene (Entity type)	ENSG00000127337 - YEATS domain containing 4
	PCYT2 Gene (Entity type)	ENSG00000185813 - phosphate cytidylyltransferase 2, ethanolamine
	SMARCB1 Gene (Entity type)	ENSG00000099956 - SWI/SNF related BAF chromatin remodeling complex subunit B1
	C4BPB Gene (Entity type)	ENSG00000123843 - complement component 4 binding protein beta
	SRP9 Gene (Entity type)	ENSG00000143742 - signal recognition particle 9
	KYAT3 Gene (Entity type)	ENSG00000137944 - kynurenine aminotransferase 3
	SELENOF Gene (Entity type)	ENSG00000183291 - selenoprotein F
	ATF1 Gene (Entity type)	ENSG00000123268 - activating transcription factor 1

ACADM

Gene (Entity type)

ENSG00000117054 - acyl-CoA dehydrogenase medium chain

BCAT2

Gene (Entity type)

ENSG00000105552 - branched chain amino acid transaminase 2

YEATS4

Gene (Entity type)

ENSG00000127337 - YEATS domain containing 4

PCYT2

Gene (Entity type)

ENSG00000185813 - phosphate cytidylyltransferase 2, ethanolamine

SMARCB1

Gene (Entity type)

ENSG00000099956 - SWI/SNF related BAF chromatin remodeling complex subunit B1

C4BPB

Gene (Entity type)

ENSG00000123843 - complement component 4 binding protein beta

SRP9

Gene (Entity type)

ENSG00000143742 - signal recognition particle 9

KYAT3

Gene (Entity type)

ENSG00000137944 - kynurenine aminotransferase 3

SELENOF

Gene (Entity type)

ENSG00000183291 - selenoprotein F

ATF1

Gene (Entity type)

ENSG00000123268 - activating transcription factor 1

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.