GSE130482 TGM2 knockdown SW480 HCT 116 2 v 0 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE130482_TGM2 knockdown_SW480_HCT 116_2_v_0_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE130482_TGM2 knockdown_SW480_HCT 116_2_v_0_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE130482_TGM2 knockdown_SW480_HCT 116_2_v_0_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE130482_TGM2 knockdown_SW480_HCT 116_2_v_0_human_up.

Results found

Linked to

	Label	Description
	OXSR1 Gene (Entity type)	ENSG00000172939 - oxidative stress responsive kinase 1
	KDM5A Gene (Entity type)	ENSG00000073614 - lysine demethylase 5A
	ACADM Gene (Entity type)	ENSG00000117054 - acyl-CoA dehydrogenase medium chain
	NRAS Gene (Entity type)	ENSG00000213281 - NRAS proto-oncogene, GTPase
	MAP2K3 Gene (Entity type)	ENSG00000034152 - mitogen-activated protein kinase kinase 3
	ZNF32 Gene (Entity type)	ENSG00000169740 - zinc finger protein 32
	MCCC1 Gene (Entity type)	ENSG00000078070 - methylcrotonyl-CoA carboxylase subunit 1
	IDH3B Gene (Entity type)	ENSG00000101365 - isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta
	PKMYT1 Gene (Entity type)	ENSG00000127564 - protein kinase, membrane associated tyrosine/threonine 1
	MED1 Gene (Entity type)	ENSG00000125686 - mediator complex subunit 1

OXSR1

Gene (Entity type)

ENSG00000172939 - oxidative stress responsive kinase 1

KDM5A

Gene (Entity type)

ENSG00000073614 - lysine demethylase 5A

ACADM

Gene (Entity type)

ENSG00000117054 - acyl-CoA dehydrogenase medium chain

NRAS

Gene (Entity type)

ENSG00000213281 - NRAS proto-oncogene, GTPase

MAP2K3

Gene (Entity type)

ENSG00000034152 - mitogen-activated protein kinase kinase 3

ZNF32

Gene (Entity type)

ENSG00000169740 - zinc finger protein 32

MCCC1

Gene (Entity type)

ENSG00000078070 - methylcrotonyl-CoA carboxylase subunit 1

IDH3B

Gene (Entity type)

ENSG00000101365 - isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta

PKMYT1

Gene (Entity type)

ENSG00000127564 - protein kinase, membrane associated tyrosine/threonine 1

MED1

Gene (Entity type)

ENSG00000125686 - mediator complex subunit 1

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.