GSE125956 SYK knockdown 3 v 2 human up (Gene Set)

Dcc Asset:

rummageo gene perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE125956_SYK knockdown_3_v_2_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE125956_SYK knockdown_3_v_2_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE125956_SYK knockdown_3_v_2_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE125956_SYK knockdown_3_v_2_human_up.

Results found

Linked to

	Label	Description
	SYNRG Gene (Entity type)	synergin gamma
	GAS5 Gene (Entity type)	growth arrest specific 5
	SNHG29 Gene (Entity type)	small nucleolar RNA host gene 29
	MSL3B Gene (Entity type)	MSL complex subunit 3B
	PAX8-AS1 Gene (Entity type)	PAX8 antisense RNA 1
	UCA1 Gene (Entity type)	urothelial cancer associated 1
	FRG1CP Gene (Entity type)	FSHD region gene 1 family member C, pseudogene
	USP2-AS1 Gene (Entity type)	USP2 antisense RNA 1
	SLC16A1-AS1 Gene (Entity type)	SLC16A1 antisense RNA 1
	LINC00973 Gene (Entity type)	long intergenic non-protein coding RNA 973

SYNRG

Gene (Entity type)

synergin gamma

GAS5

Gene (Entity type)

growth arrest specific 5

SNHG29

Gene (Entity type)

small nucleolar RNA host gene 29

MSL3B

Gene (Entity type)

MSL complex subunit 3B

PAX8-AS1

Gene (Entity type)

PAX8 antisense RNA 1

UCA1

Gene (Entity type)

urothelial cancer associated 1

FRG1CP

Gene (Entity type)

FSHD region gene 1 family member C, pseudogene

USP2-AS1

Gene (Entity type)

USP2 antisense RNA 1

SLC16A1-AS1

Gene (Entity type)

SLC16A1 antisense RNA 1

LINC00973

Gene (Entity type)

long intergenic non-protein coding RNA 973

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.