PFKM Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with PFKM Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with PFKM Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with PFKM Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with PFKM Up.

Results found

Linked to

	Label	Description
	OXSR1 Gene (Entity type)	ENSG00000172939 - oxidative stress responsive kinase 1
	GSK3B Gene (Entity type)	ENSG00000082701 - glycogen synthase kinase 3 beta
	EXT2 Gene (Entity type)	ENSG00000151348 - exostosin glycosyltransferase 2
	MAPK9 Gene (Entity type)	ENSG00000050748 - mitogen-activated protein kinase 9
	IDH3B Gene (Entity type)	ENSG00000101365 - isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta
	UBAP2 Gene (Entity type)	ENSG00000137073 - ubiquitin associated protein 2
	NUCLEOLIN Gene (Entity type)	ENSG00000115053 - nucleolin multifunctional protein
	PANK2 Gene (Entity type)	ENSG00000125779 - pantothenate kinase 2
	C1GALT1 Gene (Entity type)	ENSG00000106392 - core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
	PPP2R2A Gene (Entity type)	ENSG00000221914 - protein phosphatase 2 regulatory subunit Balpha

OXSR1

Gene (Entity type)

ENSG00000172939 - oxidative stress responsive kinase 1

GSK3B

Gene (Entity type)

ENSG00000082701 - glycogen synthase kinase 3 beta

EXT2

Gene (Entity type)

ENSG00000151348 - exostosin glycosyltransferase 2

MAPK9

Gene (Entity type)

ENSG00000050748 - mitogen-activated protein kinase 9

IDH3B

Gene (Entity type)

ENSG00000101365 - isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta

UBAP2

Gene (Entity type)

ENSG00000137073 - ubiquitin associated protein 2

NUCLEOLIN

Gene (Entity type)

ENSG00000115053 - nucleolin multifunctional protein

PANK2

Gene (Entity type)

ENSG00000125779 - pantothenate kinase 2

C1GALT1

Gene (Entity type)

ENSG00000106392 - core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

PPP2R2A

Gene (Entity type)

ENSG00000221914 - protein phosphatase 2 regulatory subunit Balpha

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.