PNCK Down (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with PNCK Down.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with PNCK Down.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with PNCK Down.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with PNCK Down.

Results found

Linked to

	Label	Description
	RRN3 Gene (Entity type)	ENSG00000085721 - RNA polymerase I transcription factor RRN3
	SNX13 Gene (Entity type)	ENSG00000071189 - sorting nexin 13
	ARHGEF9 Gene (Entity type)	ENSG00000131089 - Cdc42 guanine nucleotide exchange factor 9
	UBE2V2 Gene (Entity type)	ENSG00000169139 - ubiquitin conjugating enzyme E2 V2
	KLHL2 Gene (Entity type)	ENSG00000109466 - kelch like family member 2
	CHRNA1 Gene (Entity type)	ENSG00000138435 - cholinergic receptor nicotinic alpha 1 subunit
	ATP2C1 Gene (Entity type)	ENSG00000017260 - ATPase secretory pathway Ca2+ transporting 1
	SIKE1 Gene (Entity type)	ENSG00000052723 - suppressor of IKBKE 1
	RAB2A Gene (Entity type)	ENSG00000104388 - RAB2A, member RAS oncogene family
	DNAAF1 Gene (Entity type)	ENSG00000154099 - dynein axonemal assembly factor 1

RRN3

Gene (Entity type)

ENSG00000085721 - RNA polymerase I transcription factor RRN3

SNX13

Gene (Entity type)

ENSG00000071189 - sorting nexin 13

ARHGEF9

Gene (Entity type)

ENSG00000131089 - Cdc42 guanine nucleotide exchange factor 9

UBE2V2

Gene (Entity type)

ENSG00000169139 - ubiquitin conjugating enzyme E2 V2

KLHL2

Gene (Entity type)

ENSG00000109466 - kelch like family member 2

CHRNA1

Gene (Entity type)

ENSG00000138435 - cholinergic receptor nicotinic alpha 1 subunit

ATP2C1

Gene (Entity type)

ENSG00000017260 - ATPase secretory pathway Ca2+ transporting 1

SIKE1

Gene (Entity type)

ENSG00000052723 - suppressor of IKBKE 1

RAB2A

Gene (Entity type)

ENSG00000104388 - RAB2A, member RAS oncogene family

DNAAF1

Gene (Entity type)

ENSG00000154099 - dynein axonemal assembly factor 1

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.