BMX Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with BMX Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with BMX Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with BMX Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with BMX Up.

Results found

Linked to

	Label	Description
	HDAC2 Gene (Entity type)	ENSG00000196591 - histone deacetylase 2
	ARPC1A Gene (Entity type)	ENSG00000241685 - actin related protein 2/3 complex subunit 1A
	CCNC Gene (Entity type)	ENSG00000112237 - cyclin C
	NDUFB6 Gene (Entity type)	ENSG00000165264 - NADH:ubiquinone oxidoreductase subunit B6
	MED28 Gene (Entity type)	ENSG00000118579 - mediator complex subunit 28
	BET1 Gene (Entity type)	ENSG00000105829 - Bet1 golgi vesicular membrane trafficking protein
	MRPL40 Gene (Entity type)	ENSG00000185608 - mitochondrial ribosomal protein L40
	TIE1 Gene (Entity type)	ENSG00000066056 - tyrosine kinase with immunoglobulin like and EGF like domains 1
	PRELID3B Gene (Entity type)	ENSG00000101166 - PRELI domain containing 3B
	NSL1 Gene (Entity type)	ENSG00000117697 - NSL1 component of MIS12 kinetochore complex

HDAC2

Gene (Entity type)

ENSG00000196591 - histone deacetylase 2

ARPC1A

Gene (Entity type)

ENSG00000241685 - actin related protein 2/3 complex subunit 1A

CCNC

Gene (Entity type)

ENSG00000112237 - cyclin C

NDUFB6

Gene (Entity type)

ENSG00000165264 - NADH:ubiquinone oxidoreductase subunit B6

MED28

Gene (Entity type)

ENSG00000118579 - mediator complex subunit 28

BET1

Gene (Entity type)

ENSG00000105829 - Bet1 golgi vesicular membrane trafficking protein

MRPL40

Gene (Entity type)

ENSG00000185608 - mitochondrial ribosomal protein L40

TIE1

Gene (Entity type)

ENSG00000066056 - tyrosine kinase with immunoglobulin like and EGF like domains 1

PRELID3B

Gene (Entity type)

ENSG00000101166 - PRELI domain containing 3B

NSL1

Gene (Entity type)

ENSG00000117697 - NSL1 component of MIS12 kinetochore complex

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.