GSE139540 menadione 4 v 1 human up (Gene Set)

Dcc Asset:

rummageo chemical perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE139540_menadione_4_v_1_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE139540_menadione_4_v_1_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE139540_menadione_4_v_1_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE139540_menadione_4_v_1_human_up.

Results found

Linked to

	Label	Description
	HDAC2 Gene (Entity type)	ENSG00000196591 - histone deacetylase 2
	PPP2CB Gene (Entity type)	ENSG00000104695 - protein phosphatase 2 catalytic subunit beta
	DTX3L Gene (Entity type)	ENSG00000163840 - deltex E3 ubiquitin ligase 3L
	NSA2 Gene (Entity type)	ENSG00000164346 - NSA2 ribosome biogenesis factor
	CDR2 Gene (Entity type)	ENSG00000140743 - cerebellar degeneration related protein 2
	E2F5 Gene (Entity type)	ENSG00000133740 - E2F transcription factor 5
	CALB2 Gene (Entity type)	ENSG00000172137 - calbindin 2
	PPM1D Gene (Entity type)	ENSG00000170836 - protein phosphatase, Mg2+/Mn2+ dependent 1D
	SLC25A32 Gene (Entity type)	ENSG00000164933 - solute carrier family 25 member 32
	MRS2 Gene (Entity type)	ENSG00000124532 - magnesium transporter MRS2

HDAC2

Gene (Entity type)

ENSG00000196591 - histone deacetylase 2

PPP2CB

Gene (Entity type)

ENSG00000104695 - protein phosphatase 2 catalytic subunit beta

DTX3L

Gene (Entity type)

ENSG00000163840 - deltex E3 ubiquitin ligase 3L

NSA2

Gene (Entity type)

ENSG00000164346 - NSA2 ribosome biogenesis factor

CDR2

Gene (Entity type)

ENSG00000140743 - cerebellar degeneration related protein 2

E2F5

Gene (Entity type)

ENSG00000133740 - E2F transcription factor 5

CALB2

Gene (Entity type)

ENSG00000172137 - calbindin 2

PPM1D

Gene (Entity type)

ENSG00000170836 - protein phosphatase, Mg2+/Mn2+ dependent 1D

SLC25A32

Gene (Entity type)

ENSG00000164933 - solute carrier family 25 member 32

MRS2

Gene (Entity type)

ENSG00000124532 - magnesium transporter MRS2

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.