MATK Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with MATK Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with MATK Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with MATK Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with MATK Up.

Results found

Linked to

	Label	Description
	CDC123 Gene (Entity type)	ENSG00000151465 - cell division cycle 123
	RBCK1 Gene (Entity type)	ENSG00000125826 - RANBP2-type and C3HC4-type zinc finger containing 1
	IDH3B Gene (Entity type)	ENSG00000101365 - isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta
	PTBP2 Gene (Entity type)	ENSG00000117569 - polypyrimidine tract binding protein 2
	PANK2 Gene (Entity type)	ENSG00000125779 - pantothenate kinase 2
	PSMB5 Gene (Entity type)	ENSG00000100804 - proteasome 20S subunit beta 5
	TNF Gene (Entity type)	ENSG00000232810 - tumor necrosis factor
	RAB8B Gene (Entity type)	ENSG00000166128 - RAB8B, member RAS oncogene family
	CSNK2A1 Gene (Entity type)	ENSG00000101266 - casein kinase 2 alpha 1
	KCNN3 Gene (Entity type)	ENSG00000143603 - potassium calcium-activated channel subfamily N member 3

CDC123

Gene (Entity type)

ENSG00000151465 - cell division cycle 123

RBCK1

Gene (Entity type)

ENSG00000125826 - RANBP2-type and C3HC4-type zinc finger containing 1

IDH3B

Gene (Entity type)

ENSG00000101365 - isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta

PTBP2

Gene (Entity type)

ENSG00000117569 - polypyrimidine tract binding protein 2

PANK2

Gene (Entity type)

ENSG00000125779 - pantothenate kinase 2

PSMB5

Gene (Entity type)

ENSG00000100804 - proteasome 20S subunit beta 5

TNF

Gene (Entity type)

ENSG00000232810 - tumor necrosis factor

RAB8B

Gene (Entity type)

ENSG00000166128 - RAB8B, member RAS oncogene family

CSNK2A1

Gene (Entity type)

ENSG00000101266 - casein kinase 2 alpha 1

KCNN3

Gene (Entity type)

ENSG00000143603 - potassium calcium-activated channel subfamily N member 3

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.