GSE85880 GSE85881 tretinoin cardiac muscle cell 0 v 1 human up (Gene Set)

Dcc Asset:

rummageo chemical perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE85880_GSE85881_tretinoin_cardiac muscle cell_0_v_1_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE85880_GSE85881_tretinoin_cardiac muscle cell_0_v_1_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE85880_GSE85881_tretinoin_cardiac muscle cell_0_v_1_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE85880_GSE85881_tretinoin_cardiac muscle cell_0_v_1_human_up.

Results found

Linked to

	Label	Description
	BAZ1B Gene (Entity type)	ENSG00000009954 - bromodomain adjacent to zinc finger domain 1B
	NSA2 Gene (Entity type)	ENSG00000164346 - NSA2 ribosome biogenesis factor
	WASF3 Gene (Entity type)	ENSG00000132970 - WASP family member 3
	MED28 Gene (Entity type)	ENSG00000118579 - mediator complex subunit 28
	PPM1B Gene (Entity type)	ENSG00000138032 - protein phosphatase, Mg2+/Mn2+ dependent 1B
	TDP1 Gene (Entity type)	ENSG00000042088 - tyrosyl-DNA phosphodiesterase 1
	RPL5 Gene (Entity type)	ENSG00000122406 - ribosomal protein L5
	UVRAG Gene (Entity type)	ENSG00000198382 - UV radiation resistance associated
	INCENP Gene (Entity type)	ENSG00000149503 - inner centromere protein
	CTSF Gene (Entity type)	ENSG00000174080 - cathepsin F

BAZ1B

Gene (Entity type)

ENSG00000009954 - bromodomain adjacent to zinc finger domain 1B

NSA2

Gene (Entity type)

ENSG00000164346 - NSA2 ribosome biogenesis factor

WASF3

Gene (Entity type)

ENSG00000132970 - WASP family member 3

MED28

Gene (Entity type)

ENSG00000118579 - mediator complex subunit 28

PPM1B

Gene (Entity type)

ENSG00000138032 - protein phosphatase, Mg2+/Mn2+ dependent 1B

TDP1

Gene (Entity type)

ENSG00000042088 - tyrosyl-DNA phosphodiesterase 1

RPL5

Gene (Entity type)

ENSG00000122406 - ribosomal protein L5

UVRAG

Gene (Entity type)

ENSG00000198382 - UV radiation resistance associated

INCENP

Gene (Entity type)

ENSG00000149503 - inner centromere protein

CTSF

Gene (Entity type)

ENSG00000174080 - cathepsin F

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.