RP2 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with RP2 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with RP2 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with RP2 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with RP2 Up.

Results found

Linked to

	Label	Description
	ME3 Gene (Entity type)	ENSG00000151376 - malic enzyme 3
	ZNF611 Gene (Entity type)	ENSG00000213020 - zinc finger protein 611
	VPREB1 Gene (Entity type)	ENSG00000169575 - V-set pre-B cell surrogate light chain 1
	CDK9 Gene (Entity type)	ENSG00000136807 - cyclin dependent kinase 9
	SS18 Gene (Entity type)	ENSG00000141380 - SS18 subunit of BAF chromatin remodeling complex
	GLYAT Gene (Entity type)	ENSG00000149124 - glycine-N-acyltransferase
	EPS8L1 Gene (Entity type)	ENSG00000131037 - EPS8 signaling adaptor L1

ME3

Gene (Entity type)

ENSG00000151376 - malic enzyme 3

ZNF611

Gene (Entity type)

ENSG00000213020 - zinc finger protein 611

VPREB1

Gene (Entity type)

ENSG00000169575 - V-set pre-B cell surrogate light chain 1

CDK9

Gene (Entity type)

ENSG00000136807 - cyclin dependent kinase 9

SS18

Gene (Entity type)

ENSG00000141380 - SS18 subunit of BAF chromatin remodeling complex

GLYAT

Gene (Entity type)

ENSG00000149124 - glycine-N-acyltransferase

EPS8L1

Gene (Entity type)

ENSG00000131037 - EPS8 signaling adaptor L1

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.