SBK3 Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with SBK3 Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with SBK3 Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with SBK3 Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with SBK3 Up.

Results found

Linked to

	Label	Description
	MAD1L1 Gene (Entity type)	ENSG00000002822 - mitotic arrest deficient 1 like 1
	PTBP2 Gene (Entity type)	ENSG00000117569 - polypyrimidine tract binding protein 2
	ZNF107 Gene (Entity type)	ENSG00000196247 - zinc finger protein 107
	ATP2A1 Gene (Entity type)	ENSG00000196296 - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
	VPREB1 Gene (Entity type)	ENSG00000169575 - V-set pre-B cell surrogate light chain 1
	EGF Gene (Entity type)	ENSG00000138798 - epidermal growth factor
	MYH7 Gene (Entity type)	ENSG00000092054 - myosin heavy chain 7
	CASQ1 Gene (Entity type)	ENSG00000143318 - calsequestrin 1
	RCBTB1 Gene (Entity type)	ENSG00000136144 - RCC1 and BTB domain containing protein 1
	CCNO Gene (Entity type)	ENSG00000152669 - cyclin O

MAD1L1

Gene (Entity type)

ENSG00000002822 - mitotic arrest deficient 1 like 1

PTBP2

Gene (Entity type)

ENSG00000117569 - polypyrimidine tract binding protein 2

ZNF107

Gene (Entity type)

ENSG00000196247 - zinc finger protein 107

ATP2A1

Gene (Entity type)

ENSG00000196296 - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

VPREB1

Gene (Entity type)

ENSG00000169575 - V-set pre-B cell surrogate light chain 1

EGF

Gene (Entity type)

ENSG00000138798 - epidermal growth factor

MYH7

Gene (Entity type)

ENSG00000092054 - myosin heavy chain 7

CASQ1

Gene (Entity type)

ENSG00000143318 - calsequestrin 1

RCBTB1

Gene (Entity type)

ENSG00000136144 - RCC1 and BTB domain containing protein 1

CCNO

Gene (Entity type)

ENSG00000152669 - cyclin O

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CFDE Workbench

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.