DAP Up (Gene Set)

Dcc Asset:

LINCS L1000 CRISPR KO Consensus Sigs.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with DAP Up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with DAP Up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with DAP Up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with DAP Up.

Results found

Linked to

	Label	Description
	NDUFB6 Gene (Entity type)	ENSG00000165264 - NADH:ubiquinone oxidoreductase subunit B6
	MED28 Gene (Entity type)	ENSG00000118579 - mediator complex subunit 28
	TDP1 Gene (Entity type)	ENSG00000042088 - tyrosyl-DNA phosphodiesterase 1
	NXT1 Gene (Entity type)	ENSG00000132661 - nuclear transport factor 2 like export factor 1
	RPA2 Gene (Entity type)	ENSG00000117748 - replication protein A2
	TRAPPC4 Gene (Entity type)	ENSG00000196655 - trafficking protein particle complex subunit 4
	CTR9 Gene (Entity type)	ENSG00000198730 - CTR9 component of Paf1/RNA polymerase II complex
	DTYMK Gene (Entity type)	ENSG00000168393 - deoxythymidylate kinase
	ATF1 Gene (Entity type)	ENSG00000123268 - activating transcription factor 1
	LSM1 Gene (Entity type)	ENSG00000175324 - LSM1 homolog, mRNA degradation associated

NDUFB6

Gene (Entity type)

ENSG00000165264 - NADH:ubiquinone oxidoreductase subunit B6

MED28

Gene (Entity type)

ENSG00000118579 - mediator complex subunit 28

TDP1

Gene (Entity type)

ENSG00000042088 - tyrosyl-DNA phosphodiesterase 1

NXT1

Gene (Entity type)

ENSG00000132661 - nuclear transport factor 2 like export factor 1

RPA2

Gene (Entity type)

ENSG00000117748 - replication protein A2

TRAPPC4

Gene (Entity type)

ENSG00000196655 - trafficking protein particle complex subunit 4

CTR9

Gene (Entity type)

ENSG00000198730 - CTR9 component of Paf1/RNA polymerase II complex

DTYMK

Gene (Entity type)

ENSG00000168393 - deoxythymidylate kinase

ATF1

Gene (Entity type)

ENSG00000123268 - activating transcription factor 1

LSM1

Gene (Entity type)

ENSG00000175324 - LSM1 homolog, mRNA degradation associated

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.