GSE139540 menadione 4 v 2 human up (Gene Set)

Dcc Asset:

rummageo chemical perturbations.gmt

Processed File (Entity type)

Dcc:

LINCS

DCC (Entity type)

Analyze

Playbook Workflow Builder: Gene Set Enrichment

Perform Gene Set Enrichment with this gene set against Common Fund program's gene sets, identifying significant overlaps using a pre-built PWB workflow. Run the workflow with GSE139540_menadione_4_v_2_human_up.

GeneSetCart

GeneSetCart helps you to fetch gene sets from various data sources, augment, combine with set operations, visualize and analyze these gene sets in a single session. Start a new session with GSE139540_menadione_4_v_2_human_up.

CFDE Gene Set Enrichment (GSE)

CFDE-GSE illuminates connections between the input gene set and various CF gene sets that overlap with the queried gene set. Query CFDE-GSE with GSE139540_menadione_4_v_2_human_up.

Playbook Workflow Builder

The Playbook Workflow Builder helps you interactively construct workflows leveraging CFDE APIs without code. Start a new workflow with GSE139540_menadione_4_v_2_human_up.

Results found

Linked to

	Label	Description
	LOC105370887 Gene (Entity type)	ENSG00000261460 - uncharacterized LOC105370887
	OCIAD1-AS1 Gene (Entity type)	ENSG00000248256 - OCIAD1 antisense RNA 1
	RN7SL546P Gene (Entity type)	ENSG00000239224 - RNA, 7SL, cytoplasmic 546, pseudogene
	STAU2-AS1 Gene (Entity type)	ENSG00000253302 - STAU2 antisense RNA 1
	RPL36AP11 Gene (Entity type)	ENSG00000237003 - ribosomal protein L36a pseudogene 11
	SYNJ2-IT1 Gene (Entity type)	ENSG00000233496 - SYNJ2 intronic transcript 1
	LOC101927948 Gene (Entity type)	ENSG00000229494 - uncharacterized LOC101927948
	RPL10P17 Gene (Entity type)	ENSG00000225196 - ribosomal protein L10 pseudogene 17
	MMACHC Gene (Entity type)	ENSG00000132763 - metabolism of cobalamin associated C
	C1orf116 Gene (Entity type)	ENSG00000182795 - chromosome 1 open reading frame 116

LOC105370887

Gene (Entity type)

ENSG00000261460 - uncharacterized LOC105370887

OCIAD1-AS1

Gene (Entity type)

ENSG00000248256 - OCIAD1 antisense RNA 1

RN7SL546P

Gene (Entity type)

ENSG00000239224 - RNA, 7SL, cytoplasmic 546, pseudogene

STAU2-AS1

Gene (Entity type)

ENSG00000253302 - STAU2 antisense RNA 1

RPL36AP11

Gene (Entity type)

ENSG00000237003 - ribosomal protein L36a pseudogene 11

SYNJ2-IT1

Gene (Entity type)

ENSG00000233496 - SYNJ2 intronic transcript 1

LOC101927948

Gene (Entity type)

ENSG00000229494 - uncharacterized LOC101927948

RPL10P17

Gene (Entity type)

ENSG00000225196 - ribosomal protein L10 pseudogene 17

MMACHC

Gene (Entity type)

ENSG00000132763 - metabolism of cobalamin associated C

C1orf116

Gene (Entity type)

ENSG00000182795 - chromosome 1 open reading frame 116

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.