hmgi1 stool (Collection)

Subset Collection:

hmgi1

Collection (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:The collection contains gene index files generated by running gene predictions and annotations on assemblies from individual stool sample reads, after quality control screening. Gene sequence and annotation is provided in gff3 format, nucleotide and protein sequences in multi-FASTA format. Functional attributes assigned to each gene prediction include gene name, gene symbol, Gene Ontology (GO) assignments and Enzyme Commission (EC) numbers.

Abbreviation:hmgi1_stool

Results found

Linked to

	Label	Description
	SRS014923 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS022609 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS057717.with fasta.gff3.bz2 File (Entity type)	A 23.1 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS011134 aa.fasta.bz2 File (Entity type)	A 35.4 MB file from HMP produced from OBI:0002623 as part of the HHS project
	HHS 763536994 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	SRS045645 aa.fasta.bz2 File (Entity type)	A 21.2 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS020869 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS023971 aa.fasta.bz2 File (Entity type)	A 9.40 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS018133 aa.fasta.bz2 File (Entity type)	A 11.3 MB file from HMP produced from OBI:0002623 as part of the HHS project
	HHS 159510762 Subject (Entity type)	A subject from HMP produced as part of the HHS project

SRS014923

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS022609

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS057717.with fasta.gff3.bz2

File (Entity type)

A 23.1 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS011134 aa.fasta.bz2

File (Entity type)

A 35.4 MB file from HMP produced from OBI:0002623 as part of the HHS project

HHS 763536994

Subject (Entity type)

A subject from HMP produced as part of the HHS project

SRS045645 aa.fasta.bz2

File (Entity type)

A 21.2 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS020869

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS023971 aa.fasta.bz2

File (Entity type)

A 9.40 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS018133 aa.fasta.bz2

File (Entity type)

A 11.3 MB file from HMP produced from OBI:0002623 as part of the HHS project

HHS 159510762

Subject (Entity type)

A subject from HMP produced as part of the HHS project

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CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.