hmgi1 (Collection)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Gene Index: The collection contains gene index files generated by running gene predictions and annotations on assemblies from individual sample (690 samples) reads, after quality control screening. Gene sequence and annotation is provided in gff3 format, nucleotide and protein multi-FASTA formats with one set of files per sample. Functional attributes assigned to each gene prediction include gene name, gene symbol, Gene Ontology (GO) assignments and Enzyme Commission (EC) numbers. Annotations per sample were parsed and counts generated for each annotation attribute. Samples were then categorized by body site to provide a summary of annotation attributes by site.

Abbreviation:hmgi1

Results found

Linked to

	Label	Description
	SRS014923 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS022609 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS019124 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS015072 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS021483 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS011584 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS015793 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS022645 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS019127 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	HHS 763536994 Subject (Entity type)	A subject from HMP produced as part of the HHS project