hmcgi2 158337416 anterior nares (Collection)

Subset Collection:

hmcgi2

Collection (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Structural annotation of co-assembled contigs (refer "hmcasm2_158337416_anterior_nares" collection) was performed using Metagenemark-3.25. Translations of the resulting gene predictions were used as input for searches against Uniref100, Pfam and TIGRfam2 HMM models, TMHMM for identification of transmembrane helices, and lipoprotein motifs. Annotation was assigned using a hierarchical scheme of evidence input, providing common names, gene symbols, EC numbers and GO terms, as applicable based on the highest quality evidence available. Annotation output is a gff3 file.

Abbreviation:hmcgi2_158337416_anterior_nares

Results found

Linked to

	Label	Description
	SRS022129 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	158337416.an.gff3.bz2 File (Entity type)	A 296 KB file from HMP produced from OBI:0002623 as part of the HHS project
	HHS 158337416 Subject (Entity type)	A subject produced as part of the HHS project
	SRS012291 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	hmcgi2 Collection (Entity type)	Coassembly annotated gene index: Structural annotation of co-assembled contigs (refer "hmcasm2" coll...

SRS022129

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

158337416.an.gff3.bz2

File (Entity type)

A 296 KB file from HMP produced from OBI:0002623 as part of the HHS project

HHS 158337416

Subject (Entity type)

A subject produced as part of the HHS project

SRS012291

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

hmcgi2

Collection (Entity type)

Coassembly annotated gene index: Structural annotation of co-assembled contigs (refer "hmcasm2" coll...

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