hmcgi2 (Collection)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Coassembly annotated gene index: Structural annotation of co-assembled contigs (refer "hmcasm2" collection) was performed using Metagenemark-3.25. Translations of the resulting gene predictions were used as input for searches against Uniref100, Pfam and TIGRfam2 HMM models, TMHMM for identification of transmembrane helices, and lipoprotein motifs. Annotation was assigned using a hierarchical scheme of evidence input, providing common names, gene symbols, EC numbers and GO terms, as applicable based on the highest quality evidence available. Annotation output is a gff3 file for each co-assembly.

Abbreviation:hmcgi2

Results found

Linked to

	Label	Description
	hmcgi2 158033964 stool Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_158033964_stool" collection) was perfo...
	hmcgi2 182518224 supragingival plaque Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_182518224_supragingival_plaque" collec...
	hmcgi2 159551223 supragingival plaque Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_159551223_supragingival_plaque" collec...
	hmcgi2 316129862 anterior nares Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_316129862_anterior_nares" collection) ...
	hmcgi2 764245047 posterior fornix Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_764245047_posterior_fornix" collection...
	hmcgi2 159207311 supragingival plaque Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_159207311_supragingival_plaque" collec...
	hmcgi2 764325968 stool Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_764325968_stool" collection) was perfo...
	hmcgi2 763961826 supragingival plaque Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_763961826_supragingival_plaque" collec...
	hmcgi2 159753524 right retroauricular crease Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_159753524_right_retroauricular_crease"...
	hmcgi2 765013792 posterior fornix Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_765013792_posterior_fornix" collection...

hmcgi2 158033964 stool

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_158033964_stool" collection) was perfo...

hmcgi2 182518224 supragingival plaque

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_182518224_supragingival_plaque" collec...

hmcgi2 159551223 supragingival plaque

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_159551223_supragingival_plaque" collec...

hmcgi2 316129862 anterior nares

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_316129862_anterior_nares" collection) ...

hmcgi2 764245047 posterior fornix

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_764245047_posterior_fornix" collection...

hmcgi2 159207311 supragingival plaque

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_159207311_supragingival_plaque" collec...

hmcgi2 764325968 stool

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_764325968_stool" collection) was perfo...

hmcgi2 763961826 supragingival plaque

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_763961826_supragingival_plaque" collec...

hmcgi2 159753524 right retroauricular crease

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_159753524_right_retroauricular_crease"...

hmcgi2 765013792 posterior fornix

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_765013792_posterior_fornix" collection...

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.