hmgi2 SRS104102 (Collection)

Subset Collection:

hmgi2

Collection (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:This collection contains structural and functional annotations of assembled contigs for SRS104102 sample in a gff3 file. Structural annotation of assembled contigs was performed using Metagenemark-3.25. Translations of the resulting gene predictions were used as input for searches against Uniref100, Pfam and TIGRfam2 HMM models, TMHMM for identification of transmembrane helices, and lipoprotein motifs. Annotation was assigned using a hierarchical scheme of evidence input, providing common names, gene symbols, EC numbers and GO terms, as applicable based on the highest quality evidence available.

Abbreviation:hmgi2_SRS104102

Results found

Linked to

	Label	Description
	SRS104102 Biosample (Entity type)	A biosample produced as part of the HHS project
	SRS104102.gff3.bz2 File (Entity type)	A 125 KB file from HMP produced from OBI:0002623 as part of the HHS project
	HHS 765539774 Subject (Entity type)	A subject from HMP produced as part of the HHS project

SRS104102

Biosample (Entity type)

A biosample produced as part of the HHS project

SRS104102.gff3.bz2

File (Entity type)

A 125 KB file from HMP produced from OBI:0002623 as part of the HHS project

HHS 765539774

Subject (Entity type)

A subject from HMP produced as part of the HHS project

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