hmgi2 (Collection)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Annotated gene index: This collection contains structural and functional annotations of assembled contigs for each sample in a gff3 file. Structural annotation of assembled contigs was performed using Metagenemark-3.25. Translations of the resulting gene predictions were used as input for searches against Uniref100, Pfam and TIGRfam2 HMM models, TMHMM for identification of transmembrane helices, and lipoprotein motifs. Annotation was assigned using a hierarchical scheme of evidence input, providing common names, gene symbols, EC numbers and GO terms, as applicable based on the highest quality evidence available.

Abbreviation:hmgi2

Results found

Linked to

	Label	Description
	hmgi2 SRS019087 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS019087 sa...
	hmgi2 SRS064260 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS064260 sa...
	hmgi2 SRS015057 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS015057 sa...
	hmgi2 SRS143565 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS143565 sa...
	hmgi2 SRS098530 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS098530 sa...
	hmgi2 SRS019122 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS019122 sa...
	hmgi2 SRS893351 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS893351 sa...
	hmgi2 SRS015686 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS015686 sa...
	hmgi2 SRS065335 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS065335 sa...
	hmgi2 SRS021969 Collection (Entity type)	This collection contains structural and functional annotations of assembled contigs for SRS021969 sa...

hmgi2 SRS019087

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS019087 sa...

hmgi2 SRS064260

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS064260 sa...

hmgi2 SRS015057

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS015057 sa...

hmgi2 SRS143565

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS143565 sa...

hmgi2 SRS098530

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS098530 sa...

hmgi2 SRS019122

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS019122 sa...

hmgi2 SRS893351

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS893351 sa...

hmgi2 SRS015686

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS015686 sa...

hmgi2 SRS065335

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS065335 sa...

hmgi2 SRS021969

Collection (Entity type)

This collection contains structural and functional annotations of assembled contigs for SRS021969 sa...

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CFDE Workbench

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.