hmgi2 (Collection)

Has Time Series Data:false
Description:Annotated gene index: This collection contains structural and functional annotations of assembled contigs for each sample in a gff3 file. Structural annotation of assembled contigs was performed using Metagenemark-3.25. Translations of the resulting gene predictions were used as input for searches against Uniref100, Pfam and TIGRfam2 HMM models, TMHMM for identification of transmembrane helices, and lipoprotein motifs. Annotation was assigned using a hierarchical scheme of evidence input, providing common names, gene symbols, EC numbers and GO terms, as applicable based on the highest quality evidence available.
Abbreviation:hmgi2
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Collection

This collection contains structural and functional annotations of assembled contigs for SRS019087 sa...

Collection

This collection contains structural and functional annotations of assembled contigs for SRS064260 sa...

Collection

This collection contains structural and functional annotations of assembled contigs for SRS015057 sa...

Collection

This collection contains structural and functional annotations of assembled contigs for SRS143565 sa...

Collection

This collection contains structural and functional annotations of assembled contigs for SRS098530 sa...

Collection

This collection contains structural and functional annotations of assembled contigs for SRS019122 sa...

Collection

This collection contains structural and functional annotations of assembled contigs for SRS893351 sa...

Collection

This collection contains structural and functional annotations of assembled contigs for SRS015686 sa...

Collection

This collection contains structural and functional annotations of assembled contigs for SRS065335 sa...

Collection

This collection contains structural and functional annotations of assembled contigs for SRS021969 sa...

  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS019087 sa...


  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS064260 sa...


  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS015057 sa...


  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS143565 sa...


  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS098530 sa...


  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS019122 sa...


  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS893351 sa...


  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS015686 sa...


  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS065335 sa...


  • Collection

    This collection contains structural and functional annotations of assembled contigs for SRS021969 sa...

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    This repository is under review for potential modification in compliance with Administration directives.