hmgi2 SRS077075 (Collection)

Subset Collection:

hmgi2

Collection (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:This collection contains structural and functional annotations of assembled contigs for SRS077075 sample in a gff3 file. Structural annotation of assembled contigs was performed using Metagenemark-3.25. Translations of the resulting gene predictions were used as input for searches against Uniref100, Pfam and TIGRfam2 HMM models, TMHMM for identification of transmembrane helices, and lipoprotein motifs. Annotation was assigned using a hierarchical scheme of evidence input, providing common names, gene symbols, EC numbers and GO terms, as applicable based on the highest quality evidence available.

Abbreviation:hmgi2_SRS077075

Results found

Linked to

	Label	Description
	HHS 763982056 Subject (Entity type)	A subject produced as part of the HHS project
	SRS077075 Biosample (Entity type)	A biosample produced as part of the HHS project
	SRS077075.gff3.bz2 File (Entity type)	A 4.71 MB file from HMP produced from OBI:0002623 as part of the HHS project

HHS 763982056

Subject (Entity type)

A subject produced as part of the HHS project

SRS077075

Biosample (Entity type)

A biosample produced as part of the HHS project

SRS077075.gff3.bz2

File (Entity type)

A 4.71 MB file from HMP produced from OBI:0002623 as part of the HHS project

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