hmcasm2 638754422 supragingival plaque (Collection)

Subset Collection:

hmcasm2

Collection (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Quality trimmed reads generated from supragingival_plaque samples from HHS_638754422 host across multiple visits were concatenated and subjected to the same assembly strategy as individual samples, undergoing digital normalization followed by assembly with IDBA-UD. This multi-FASTA file containing assembled contigs is generated per 2 or 3 (depending on the number of available visits for this subject) input sample files.

Abbreviation:hmcasm2_638754422_supragingival_plaque

Results found

Linked to

	Label	Description
	SRS042984 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	638754422.spp.fna.bz2 File (Entity type)	A 120 MB file from HMP produced from OBI:0002623 as part of the HHS project
	HHS 638754422 Subject (Entity type)	A subject produced as part of the HHS project
	SRS101445 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS022149 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	hmcasm2 Collection (Entity type)	Co-assembled metagenomes: Quality trimmed reads generated from samples from the same human host and ...

SRS042984

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

638754422.spp.fna.bz2

File (Entity type)

A 120 MB file from HMP produced from OBI:0002623 as part of the HHS project

HHS 638754422

Subject (Entity type)

A subject produced as part of the HHS project

SRS101445

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS022149

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

hmcasm2

Collection (Entity type)

Co-assembled metagenomes: Quality trimmed reads generated from samples from the same human host and ...

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

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