hmcasm2 (Collection)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Co-assembled metagenomes: Quality trimmed reads generated from samples from the same human host and body site across multiple visits (two or three) were concatenated and subjected to the same assembly strategy as individual samples, undergoing digital normalization followed by assembly with IDBA-UD. One multi-FASTA file containing assembled contigs is generated per 2 or 3 (depending on the number of available visits for that subject) input sample files.

Abbreviation:hmcasm2

Results found

Linked to

	Label	Description
	hmcasm2 797461496 posterior fornix Collection (Entity type)	Quality trimmed reads generated from posterior_fornix samples from HHS_797461496 host across multipl...
	hmcasm2 115629832 buccal mucosa Collection (Entity type)	Quality trimmed reads generated from buccal_mucosa samples from HHS_115629832 host across multiple v...
	hmcasm2 764487809 supragingival plaque Collection (Entity type)	Quality trimmed reads generated from supragingival_plaque samples from HHS_764487809 host across mul...
	hmcasm2 147406386 anterior nares Collection (Entity type)	Quality trimmed reads generated from anterior_nares samples from HHS_147406386 host across multiple ...
	hmcasm2 160380657 buccal mucosa Collection (Entity type)	Quality trimmed reads generated from buccal_mucosa samples from HHS_160380657 host across multiple v...
	hmcasm2 764467579 buccal mucosa Collection (Entity type)	Quality trimmed reads generated from buccal_mucosa samples from HHS_764467579 host across multiple v...
	hmcasm2 686765762 tongue dorsum Collection (Entity type)	Quality trimmed reads generated from tongue_dorsum samples from HHS_686765762 host across multiple v...
	hmcasm2 160421117 anterior nares Collection (Entity type)	Quality trimmed reads generated from anterior_nares samples from HHS_160421117 host across multiple ...
	hmcasm2 765337473 posterior fornix Collection (Entity type)	Quality trimmed reads generated from posterior_fornix samples from HHS_765337473 host across multipl...
	hmcasm2 765135172 anterior nares Collection (Entity type)	Quality trimmed reads generated from anterior_nares samples from HHS_765135172 host across multiple ...

hmcasm2 797461496 posterior fornix

Collection (Entity type)

Quality trimmed reads generated from posterior_fornix samples from HHS_797461496 host across multipl...

hmcasm2 115629832 buccal mucosa

Collection (Entity type)

Quality trimmed reads generated from buccal_mucosa samples from HHS_115629832 host across multiple v...

hmcasm2 764487809 supragingival plaque

Collection (Entity type)

Quality trimmed reads generated from supragingival_plaque samples from HHS_764487809 host across mul...

hmcasm2 147406386 anterior nares

Collection (Entity type)

Quality trimmed reads generated from anterior_nares samples from HHS_147406386 host across multiple ...

hmcasm2 160380657 buccal mucosa

Collection (Entity type)

Quality trimmed reads generated from buccal_mucosa samples from HHS_160380657 host across multiple v...

hmcasm2 764467579 buccal mucosa

Collection (Entity type)

Quality trimmed reads generated from buccal_mucosa samples from HHS_764467579 host across multiple v...

hmcasm2 686765762 tongue dorsum

Collection (Entity type)

Quality trimmed reads generated from tongue_dorsum samples from HHS_686765762 host across multiple v...

hmcasm2 160421117 anterior nares

Collection (Entity type)

Quality trimmed reads generated from anterior_nares samples from HHS_160421117 host across multiple ...

hmcasm2 765337473 posterior fornix

Collection (Entity type)

Quality trimmed reads generated from posterior_fornix samples from HHS_765337473 host across multipl...

hmcasm2 765135172 anterior nares

Collection (Entity type)

Quality trimmed reads generated from anterior_nares samples from HHS_765135172 host across multiple ...

DISPLAY PER PAGE

CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.