hmcasm2 (Collection)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:0

Description:Co-assembled metagenomes: Quality trimmed reads generated from samples from the same human host and body site across multiple visits (two or three) were concatenated and subjected to the same assembly strategy as individual samples, undergoing digital normalization followed by assembly with IDBA-UD. One multi-FASTA file containing assembled contigs is generated per 2 or 3 (depending on the number of available visits for that subject) input sample files.

Abbreviation:hmcasm2

Results found

Linked to

	Label	Description
	hmcasm2 160380657 buccal mucosa Collection (Entity type)	Quality trimmed reads generated from buccal_mucosa samples from HHS_160380657 host across multiple v...
	hmcasm2 686765762 tongue dorsum Collection (Entity type)	Quality trimmed reads generated from tongue_dorsum samples from HHS_686765762 host across multiple v...
	hmcasm2 160421117 anterior nares Collection (Entity type)	Quality trimmed reads generated from anterior_nares samples from HHS_160421117 host across multiple ...
	hmcasm2 765337473 posterior fornix Collection (Entity type)	Quality trimmed reads generated from posterior_fornix samples from HHS_765337473 host across multipl...
	hmcasm2 765135172 anterior nares Collection (Entity type)	Quality trimmed reads generated from anterior_nares samples from HHS_765135172 host across multiple ...
	hmcasm2 868454789 supragingival plaque Collection (Entity type)	Quality trimmed reads generated from supragingival_plaque samples from HHS_868454789 host across mul...
	hmcasm2 550534656 buccal mucosa Collection (Entity type)	Quality trimmed reads generated from buccal_mucosa samples from HHS_550534656 host across multiple v...
	hmcasm2 764062976 stool Collection (Entity type)	Quality trimmed reads generated from stool samples from HHS_764062976 host across multiple visits we...
	hmcasm2 823052294 stool Collection (Entity type)	Quality trimmed reads generated from stool samples from HHS_823052294 host across multiple visits we...
	hmcasm2 550534656 tongue dorsum Collection (Entity type)	Quality trimmed reads generated from tongue_dorsum samples from HHS_550534656 host across multiple v...

hmcasm2 160380657 buccal mucosa

Collection (Entity type)

Quality trimmed reads generated from buccal_mucosa samples from HHS_160380657 host across multiple v...

hmcasm2 686765762 tongue dorsum

Collection (Entity type)

Quality trimmed reads generated from tongue_dorsum samples from HHS_686765762 host across multiple v...

hmcasm2 160421117 anterior nares

Collection (Entity type)

Quality trimmed reads generated from anterior_nares samples from HHS_160421117 host across multiple ...

hmcasm2 765337473 posterior fornix

Collection (Entity type)

Quality trimmed reads generated from posterior_fornix samples from HHS_765337473 host across multipl...

hmcasm2 765135172 anterior nares

Collection (Entity type)

Quality trimmed reads generated from anterior_nares samples from HHS_765135172 host across multiple ...

hmcasm2 868454789 supragingival plaque

Collection (Entity type)

Quality trimmed reads generated from supragingival_plaque samples from HHS_868454789 host across mul...

hmcasm2 550534656 buccal mucosa

Collection (Entity type)

Quality trimmed reads generated from buccal_mucosa samples from HHS_550534656 host across multiple v...

hmcasm2 764062976 stool

Collection (Entity type)

Quality trimmed reads generated from stool samples from HHS_764062976 host across multiple visits we...

hmcasm2 823052294 stool

Collection (Entity type)

Quality trimmed reads generated from stool samples from HHS_823052294 host across multiple visits we...

hmcasm2 550534656 tongue dorsum

Collection (Entity type)

Quality trimmed reads generated from tongue_dorsum samples from HHS_550534656 host across multiple v...

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.