HBM745.CTDD.524 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Subset Collection:

HBM562.RDSK.288

Collection (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

placenta

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM745.CTDD.524

Has Time Series Data:0

Description:These GeoMx spatial transcriptomics datasets were generated from term human placenta FFPE sections using the Whole Transcriptome Atlas assay. Guided by morphological markers, automated cell segmentation was used to define and profile regions of interest encompassing the major placental cell types, including extravillous trophoblast, syncytiotrophoblast, and endothelial cells.

Creation Time:2026-02-24 20:33:14.977000

Results found

Linked to

	Label	Description
	DSP-1001660015072-G-F03 S111 L002 R2 001.fastq.gz File (Entity type)	A 24.6 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015072-G-A01 S49 L002 R2 001.fastq.gz File (Entity type)	A 1.41 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015072-G-F03 S111 L002 R1 001.fastq.gz File (Entity type)	A 22.1 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015072-G-A01 S49 L002 R1 001.fastq.gz File (Entity type)	A 1.37 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	3138 pB F.ome.tiff File (Entity type)	A 7.39 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	b59a8eca4f8210629959a6bd44a28d9a-metadata.tsv File (Entity type)	A 1.25 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	Donor 3138 10052022 20221006T1905 LabWorksheet.txt File (Entity type)	A 18.8 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	microscope hardware.json File (Entity type)	A 9.42 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	geomx-rnaseq-with-probes-metadata.tsv File (Entity type)	A 1.89 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	metadata.json File (Entity type)	A 39.9 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015072-G-F03 S111 L002 R2 001.fastq.gz

File (Entity type)

A 24.6 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015072-G-A01 S49 L002 R2 001.fastq.gz

File (Entity type)

A 1.41 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015072-G-F03 S111 L002 R1 001.fastq.gz

File (Entity type)

A 22.1 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015072-G-A01 S49 L002 R1 001.fastq.gz

File (Entity type)

A 1.37 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

3138 pB F.ome.tiff

File (Entity type)

A 7.39 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

b59a8eca4f8210629959a6bd44a28d9a-metadata.tsv

File (Entity type)

A 1.25 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

Donor 3138 10052022 20221006T1905 LabWorksheet.txt

File (Entity type)

A 18.8 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

microscope hardware.json

File (Entity type)

A 9.42 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

geomx-rnaseq-with-probes-metadata.tsv

File (Entity type)

A 1.89 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

metadata.json

File (Entity type)

A 39.9 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.