SRS023938 (Biosample)

Subject:

HHS 159268001

Subject (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Anatomy:

supragingival dental plaque

Anatomy (Entity type)

Results found

Linked to

	Label	Description
	Supragingival plaque.tar.bz2 File (Entity type)	A 259 MB file from HMP produced from OBI:0002623 as part of the HHS project
	159268001.spp.gff3.bz2 File (Entity type)	A 23.2 MB file from HMP produced from OBI:0002623 as part of the HHS project
	metacyc enzyme.combined md.txt.bz2 File (Entity type)	A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project
	hmwgsqcv2 SRS023938 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS023938 sample to SRA whe...
	hmgoi1 SRS023938 genels Collection (Entity type)	Gene abundance file (ie how many copies are present in the community) for SRS023938 sample
	Synthetic gene clusters md.txt.bz2 File (Entity type)	A 367 MB file from HMP produced from OBI:0002623 as part of the HHS project
	hmgi1 Collection (Entity type)	Gene Index: The collection contains gene index files generated by running gene predictions and annot...
	SRR041514.fastq File (Entity type)	A 7.78 MB file from HMP produced from OBI:0002763 as part of the HHS project
	hmgoi1 carbohydrate active enzymes Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for carbohydrate_active_enzyme...
	hmgoi1 viruses Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for virus genes.

Supragingival plaque.tar.bz2

File (Entity type)

A 259 MB file from HMP produced from OBI:0002623 as part of the HHS project

159268001.spp.gff3.bz2

File (Entity type)

A 23.2 MB file from HMP produced from OBI:0002623 as part of the HHS project

metacyc enzyme.combined md.txt.bz2

File (Entity type)

A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmwgsqcv2 SRS023938

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS023938 sample to SRA whe...

hmgoi1 SRS023938 genels

Collection (Entity type)

Gene abundance file (ie how many copies are present in the community) for SRS023938 sample

Synthetic gene clusters md.txt.bz2

File (Entity type)

A 367 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmgi1

Collection (Entity type)

Gene Index: The collection contains gene index files generated by running gene predictions and annot...

SRR041514.fastq

File (Entity type)

A 7.78 MB file from HMP produced from OBI:0002763 as part of the HHS project

hmgoi1 carbohydrate active enzymes

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for carbohydrate_active_enzyme...

hmgoi1 viruses

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for virus genes.

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.