AtopDerm (Project)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Child Project:

Demo

Project (Entity type)

Description:The goal of this project was to investigate the skin microbiota of atopic dermatitis (AD) patients at specific timepoints (quiescence, disease flares, and post-treatment) to examine how disease state correlated with changes in the skin microflora. Bacterial diversity associated with AD was examined using a 16S rRNA survey and later broadened to include fungi, viruses, archaea and mites. In addition, bacteria were cultured on a wide variety of media and isolates representing both abundant and novel species were selected for whole genome sequencing. To characterize fungal diversity, two phylogenetic markers within the rDNA region were utilized: 18S rRNA and the Intervening Internal Transcribed Spacer (ITS) region. Full microbial diversity was explored with shotgun metagenomic sequencing.

Abbreviation:AtopDerm

Results found

Linked to

	Label	Description
	SRR995968.fastq File (Entity type)	A 3.37 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project
	SRR997102.fastq File (Entity type)	A 9.92 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project
	SRS482798 Biosample (Entity type)	A biosample from HMP produced as part of the AtopDerm project
	SRR995171.fastq File (Entity type)	A 2.91 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project
	SRS482729 Biosample (Entity type)	A biosample from HMP produced as part of the AtopDerm project
	SRR995776.fastq File (Entity type)	A 3.90 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project
	SRR919516.fastq File (Entity type)	A 3.73 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project
	SRR920285.fastq File (Entity type)	A 4.68 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project
	SRS451774 Biosample (Entity type)	A biosample from HMP produced as part of the AtopDerm project
	SRR996703.fastq File (Entity type)	A 65.6 KB file from HMP produced from OBI:0002763 as part of the AtopDerm project

SRR995968.fastq

File (Entity type)

A 3.37 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project

SRR997102.fastq

File (Entity type)

A 9.92 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project

SRS482798

Biosample (Entity type)

A biosample from HMP produced as part of the AtopDerm project

SRR995171.fastq

File (Entity type)

A 2.91 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project

SRS482729

Biosample (Entity type)

A biosample from HMP produced as part of the AtopDerm project

SRR995776.fastq

File (Entity type)

A 3.90 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project

SRR919516.fastq

File (Entity type)

A 3.73 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project

SRR920285.fastq

File (Entity type)

A 4.68 MB file from HMP produced from OBI:0002763 as part of the AtopDerm project

SRS451774

Biosample (Entity type)

A biosample from HMP produced as part of the AtopDerm project

SRR996703.fastq

File (Entity type)

A 65.6 KB file from HMP produced from OBI:0002763 as part of the AtopDerm project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.