RefGen (Project)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Child Project:

HMP1

Project (Entity type)

Description:As part of the Human Microbiome Project Phase 1 (HMP1), ~3000 reference genomes were sequenced from isolate strains collected from human body sites. The information gained from the reference genomes aided in taxonomic assignment and functional annotation of sequence generated from the HMP.

Abbreviation:RefGen

Results found

Linked to

	Label	Description
	AMAG00000000.cds.bz2 File (Entity type)	A 769 KB file from HMP produced from OBI:0002117 as part of the RefGen project
	SAMN02463733 Biosample (Entity type)	A biosample from HMP produced as part of the RefGen project
	198884 KE993054.1-KE993173.1.fasta.bz2 File (Entity type)	A 1.03 MB file from HMP produced from OBI:0002117 as part of the RefGen project
	274529 KV839783.1-KV839858.1.fasta.bz2 File (Entity type)	A 796 KB file from HMP produced from OBI:0002117 as part of the RefGen project
	2018RefGen SAMN00139181 Collection (Entity type)	2018 annotation of Brevibacterium mcbrellneri ATCC 49030
	AWSU00000000.cds.bz2 File (Entity type)	A 1.25 MB file from HMP produced from OBI:0002117 as part of the RefGen project
	2013 53059.GL732463-GL732465.pep.fsa.bz2 File (Entity type)	A 287 KB file from HMP produced from OBI:0002117 as part of the RefGen project
	2018RefGen SAMN02597449 Collection (Entity type)	2018 annotation of Providencia alcalifaciens F90-2004
	82069 AMAD01000001.1-AMAD01000304.1.fasta.bz2 File (Entity type)	A 859 KB file from HMP produced from OBI:0002117 as part of the RefGen project
	LTWH00000000 attributor.annotation.gff3.bz2 File (Entity type)	A 2.30 MB file from HMP produced from OBI:0002117 as part of the RefGen project

AMAG00000000.cds.bz2

File (Entity type)

A 769 KB file from HMP produced from OBI:0002117 as part of the RefGen project

SAMN02463733

Biosample (Entity type)

A biosample from HMP produced as part of the RefGen project

198884 KE993054.1-KE993173.1.fasta.bz2

File (Entity type)

A 1.03 MB file from HMP produced from OBI:0002117 as part of the RefGen project

274529 KV839783.1-KV839858.1.fasta.bz2

File (Entity type)

A 796 KB file from HMP produced from OBI:0002117 as part of the RefGen project

2018RefGen SAMN00139181

Collection (Entity type)

2018 annotation of Brevibacterium mcbrellneri ATCC 49030

AWSU00000000.cds.bz2

File (Entity type)

A 1.25 MB file from HMP produced from OBI:0002117 as part of the RefGen project

2013 53059.GL732463-GL732465.pep.fsa.bz2

File (Entity type)

A 287 KB file from HMP produced from OBI:0002117 as part of the RefGen project

2018RefGen SAMN02597449

Collection (Entity type)

2018 annotation of Providencia alcalifaciens F90-2004

82069 AMAD01000001.1-AMAD01000304.1.fasta.bz2

File (Entity type)

A 859 KB file from HMP produced from OBI:0002117 as part of the RefGen project

LTWH00000000 attributor.annotation.gff3.bz2

File (Entity type)

A 2.30 MB file from HMP produced from OBI:0002117 as part of the RefGen project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.