EsophAdeno (Project)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Child Project:

Demo

Project (Entity type)

Description:This project tested the hypothesis that changes in the foregut microbiome are associated with esophageal adenocarcinoma (EA), an end result of a sequence of gastroesophageal reflux diseases (GERD), preceded by reflux esophagitis (RE) and Barrett's esophagus (BE). It involved a case-control study to demonstrate the microbiome-disease association in every stage of GERD sequence as well as analysis of the trend in changes in the microbiome along disease progression toward EA. Detailed analyses which included pathway-disease and gene-disease associations were conducted. Archaea, fungi and viruses were also correlated with the diseases based on their identification.

Abbreviation:EsophAdeno

Results found

Linked to

	Label	Description
	SRR1023421.fastq File (Entity type)	A 44.7 MB file from HMP produced from OBI:0002763 as part of the EsophAdeno project
	SRR1023474.fastq File (Entity type)	A 23.0 MB file from HMP produced from OBI:0002763 as part of the EsophAdeno project
	SRS508222 Biosample (Entity type)	A biosample from HMP produced as part of the EsophAdeno project
	SRS260343 qc.fastq.bz2 File (Entity type)	A 550 MB file from HMP produced from OBI:0002623 as part of the EsophAdeno project
	SRS260341 summary stats.json File (Entity type)	A 2.12 KB file from HMP produced from OBI:0002623 as part of the EsophAdeno project
	SRR1023198.fastq File (Entity type)	A 18.7 MB file from HMP produced from OBI:0002763 as part of the EsophAdeno project
	SRS466500 summary stats.json File (Entity type)	A 2.12 KB file from HMP produced from OBI:0002623 as part of the EsophAdeno project
	SRS498108 humann2 genefamilies.tsv.bz2 File (Entity type)	A 1.09 MB file from HMP produced from OBI:0002623 as part of the EsophAdeno project
	SRS508342 Biosample (Entity type)	A biosample from HMP produced as part of the EsophAdeno project
	SRR1023232.fastq File (Entity type)	A 15.4 MB file from HMP produced from OBI:0002763 as part of the EsophAdeno project

SRR1023421.fastq

File (Entity type)

A 44.7 MB file from HMP produced from OBI:0002763 as part of the EsophAdeno project

SRR1023474.fastq

File (Entity type)

A 23.0 MB file from HMP produced from OBI:0002763 as part of the EsophAdeno project

SRS508222

Biosample (Entity type)

A biosample from HMP produced as part of the EsophAdeno project

SRS260343 qc.fastq.bz2

File (Entity type)

A 550 MB file from HMP produced from OBI:0002623 as part of the EsophAdeno project

SRS260341 summary stats.json

File (Entity type)

A 2.12 KB file from HMP produced from OBI:0002623 as part of the EsophAdeno project

SRR1023198.fastq

File (Entity type)

A 18.7 MB file from HMP produced from OBI:0002763 as part of the EsophAdeno project

SRS466500 summary stats.json

File (Entity type)

A 2.12 KB file from HMP produced from OBI:0002623 as part of the EsophAdeno project

SRS498108 humann2 genefamilies.tsv.bz2

File (Entity type)

A 1.09 MB file from HMP produced from OBI:0002623 as part of the EsophAdeno project

SRS508342

Biosample (Entity type)

A biosample from HMP produced as part of the EsophAdeno project

SRR1023232.fastq

File (Entity type)

A 15.4 MB file from HMP produced from OBI:0002763 as part of the EsophAdeno project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.