T2D (Project)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Child Project:

iHMP

Project (Entity type)

Description:The goal of this project was to better understand Type 2 diabetes (T2D) at its earliest stages. The project followed 106 healthy and prediabetic subjects during periods of health, respiratory viral infection (RVI) and other perturbations. In one such perturbation, a subset of 23 individuals underwent a directed weight gain followed by weight loss. In total, 1,092 collections across all participants were profiled. Samples (primarily blood and stool) were collected quarterly and additional samples collected during periods of RVI and other stresses. The genomes of the participants were sequenced and measurements of transcriptomes, proteomes, metabolomes, and microbiomes taken at each visit, in addition to clinical details.

Abbreviation:T2D

Results found

Linked to

	Label	Description
	SRR6653654 SRS2897717.filtered.fastq.bz2 File (Entity type)	A 3.59 MB file from HMP produced from OBI:0002763 as part of the T2D project
	SRR6657357 SRS2901236 summary stats.json File (Entity type)	A 1.10 KB file from HMP produced from OBI:0002763 as part of the T2D project
	SRR6657320 SRS2901274 dada2.biom.bz2 File (Entity type)	A 1.91 KB file from HMP produced from OBI:0002763 as part of the T2D project
	PRJNA497499 ZPF36E2-01 Biosample (Entity type)	A biosample from HMP produced as part of the T2D project
	PRJNA497499 ZX52KVK 1011 Biosample (Entity type)	A biosample from HMP produced as part of the T2D project
	Cytokine ZY1ZKJY 08.tsv.bz2 File (Entity type)	A 674 B file from HMP produced from OBI:0002766 as part of the T2D project
	HMP2 J45210 1 ST T0 B0 0120 ZOZOW1T-6041-5 APATM.biom.bz2 File (Entity type)	A 25.3 KB file from HMP produced from OBI:0002763 as part of the T2D project
	SRR6651290 SRS2895781 dada2.biom.bz2 File (Entity type)	A 2.23 KB file from HMP produced from OBI:0002763 as part of the T2D project
	HMP2 J09152 M ST T0 B0 0120 ZYHHR4Z-01 C93B2ANXX L008 R2.fastq.bz2 File (Entity type)	A 258 MB file from HMP produced from OBI:0002623 as part of the T2D project
	SRR6658094 2.fastq File (Entity type)	A 21.8 MB file from HMP produced from OBI:0002763 as part of the T2D project

SRR6653654 SRS2897717.filtered.fastq.bz2

File (Entity type)

A 3.59 MB file from HMP produced from OBI:0002763 as part of the T2D project

SRR6657357 SRS2901236 summary stats.json

File (Entity type)

A 1.10 KB file from HMP produced from OBI:0002763 as part of the T2D project

SRR6657320 SRS2901274 dada2.biom.bz2

File (Entity type)

A 1.91 KB file from HMP produced from OBI:0002763 as part of the T2D project

PRJNA497499 ZPF36E2-01

Biosample (Entity type)

A biosample from HMP produced as part of the T2D project

PRJNA497499 ZX52KVK 1011

Biosample (Entity type)

A biosample from HMP produced as part of the T2D project

Cytokine ZY1ZKJY 08.tsv.bz2

File (Entity type)

A 674 B file from HMP produced from OBI:0002766 as part of the T2D project

HMP2 J45210 1 ST T0 B0 0120 ZOZOW1T-6041-5 APATM.biom.bz2

File (Entity type)

A 25.3 KB file from HMP produced from OBI:0002763 as part of the T2D project

SRR6651290 SRS2895781 dada2.biom.bz2

File (Entity type)

A 2.23 KB file from HMP produced from OBI:0002763 as part of the T2D project

HMP2 J09152 M ST T0 B0 0120 ZYHHR4Z-01 C93B2ANXX L008 R2.fastq.bz2

File (Entity type)

A 258 MB file from HMP produced from OBI:0002623 as part of the T2D project

SRR6658094 2.fastq

File (Entity type)

A 21.8 MB file from HMP produced from OBI:0002763 as part of the T2D project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.