HBM793.WWZC.833 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

right kidney

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM793.WWZC.833

Has Time Series Data:0

Description:Autofluorescence Microscopy collected from the right kidney of a 57-year-old white Male donor by the Biomolecular Multimodal Imaging Center (BIOMIC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Autofluorescence images were collected with a Carl Zeiss microscopy AxioScan.Z1 using 3 channels/filters -- DAPI (excitation: 335-383 nm/emission: 420-470 nm), eGFP (excitation: 450-490 nm/emission: 500-550 nm), and dsRed (excitation: 538-562 nm/emission: 570-640 nm). Support was provided by the NIH Common Fund and National Institute of Diabetes and Digestive and Kidney Diseases (U54 DK120058). Tissue was collected through the Cooperative Human Tissue Network with support provided by the NIH National Cancer Institute (5 UM1 CA183727-08).

Creation Time:2024-03-22 16:39:43.066000

Results found

Linked to

	Label	Description
	right kidney Anatomy (Entity type)	A kidney that is part of a right side of organism.
	VAN0042-RK-3-19-registered-glomeruli.geojson File (Entity type)	A 1.18 MB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	VAN0042-RK-3-19-registered-postAF-registered.ome.tiff File (Entity type)	A 2.52 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	antibodies.tsv File (Entity type)	A 1.00 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	contributors.tsv File (Entity type)	A 3.78 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	VAN0042-RK-3-19-registered-PAS-to-postAF-transformations.txt File (Entity type)	A 3.86 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	VAN0042-RK-3-19-registered-preAF-to-postAF-registered.ome.tiff File (Entity type)	A 3.36 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	channel layout.tsv File (Entity type)	A 76.0 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	2e7123dcf2e9092a42ac42e44c2d686b-metadata.tsv File (Entity type)	A 794 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	metadata.json File (Entity type)	A 46.8 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

right kidney

Anatomy (Entity type)

A kidney that is part of a right side of organism.

VAN0042-RK-3-19-registered-glomeruli.geojson

File (Entity type)

A 1.18 MB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

VAN0042-RK-3-19-registered-postAF-registered.ome.tiff

File (Entity type)

A 2.52 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

antibodies.tsv

File (Entity type)

A 1.00 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

contributors.tsv

File (Entity type)

A 3.78 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

VAN0042-RK-3-19-registered-PAS-to-postAF-transformations.txt

File (Entity type)

A 3.86 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

VAN0042-RK-3-19-registered-preAF-to-postAF-registered.ome.tiff

File (Entity type)

A 3.36 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

channel layout.tsv

File (Entity type)

A 76.0 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

2e7123dcf2e9092a42ac42e44c2d686b-metadata.tsv

File (Entity type)

A 794 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

metadata.json

File (Entity type)

A 46.8 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.