HBM457.NJMR.833 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

right ovary

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM457.NJMR.833

Has Time Series Data:0

Description:This upload supersedes the one originally done in December 2023. It contains exactly the same raw data files (FASTQ) for the same 83 sample datasets, for uterus/ovary/Fallopian tube. The only things that have changed are: 1) a correction to one field in the Visium-RNAseq metadata file (the "library layout" for all samples); and 2) new OME-TIFF files, with the exact same image data as before, but with corrections to the metadata in the XML header of each file. : ./Visium_9ORC_S4_S1

Creation Time:2025-02-19 02:29:34.748000

Results found

Linked to

	Label	Description
	right ovary Anatomy (Entity type)	An ovary that is part of a right side of organism.
	Visium 9ORC S4 S1 S11 L001 R2 001.fastq.gz File (Entity type)	A 3.34 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Visium 9ORC S4 S1 S11 L001 R1 001.fastq.gz File (Entity type)	A 1.48 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Visium 9ORC S4 S1 S11 L002 R2 001.fastq.gz File (Entity type)	A 3.32 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Visium 9ORC S4 S1 S11 L002 R1 001.fastq.gz File (Entity type)	A 1.48 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0045.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0112.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0150.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0175.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0114.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

right ovary

Anatomy (Entity type)

An ovary that is part of a right side of organism.

Visium 9ORC S4 S1 S11 L001 R2 001.fastq.gz

File (Entity type)

A 3.34 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Visium 9ORC S4 S1 S11 L001 R1 001.fastq.gz

File (Entity type)

A 1.48 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Visium 9ORC S4 S1 S11 L002 R2 001.fastq.gz

File (Entity type)

A 3.32 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Visium 9ORC S4 S1 S11 L002 R1 001.fastq.gz

File (Entity type)

A 1.48 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Brightfield HE 10msec image 0045.tiff

File (Entity type)