HBM854.FHKS.628 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Subset Collection:

HBM723.DGSS.876

Collection (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

placenta

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM854.FHKS.628

Has Time Series Data:0

Description:These GeoMx spatial transcriptomics datasets were generated from term human placenta FFPE sections using the Whole Transcriptome Atlas assay. Guided by morphological markers, automated cell segmentation was used to define and profile regions of interest encompassing the major placental cell types, including extravillous trophoblast, syncytiotrophoblast, and endothelial cells.

Creation Time:2026-02-25 14:11:09.505000

Results found

Linked to

	Label	Description
	DSP-1001660015089-B-B12 S492 L004 R2 001.fastq.gz File (Entity type)	A 120 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015089-B-B12 S492 L004 R1 001.fastq.gz File (Entity type)	A 114 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015089-B-A01 S469 L004 R2 001.fastq.gz File (Entity type)	A 1.18 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015089-B-A01 S469 L004 R1 001.fastq.gz File (Entity type)	A 1.13 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	Various repeats 01182023 20230124T2138 LabWorksheet.txt File (Entity type)	A 27.7 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	geomx-rnaseq-with-probes-metadata.tsv File (Entity type)	A 1.89 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	b9d28407fb5bc61152d2921132384fde-metadata.tsv File (Entity type)	A 1.25 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	contributors.tsv File (Entity type)	A 957 B file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	3115 pA M.ome.tiff File (Entity type)	A 7.92 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	metadata.json File (Entity type)	A 39.2 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015089-B-B12 S492 L004 R2 001.fastq.gz

File (Entity type)

A 120 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015089-B-B12 S492 L004 R1 001.fastq.gz

File (Entity type)

A 114 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015089-B-A01 S469 L004 R2 001.fastq.gz

File (Entity type)

A 1.18 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015089-B-A01 S469 L004 R1 001.fastq.gz

File (Entity type)

A 1.13 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

Various repeats 01182023 20230124T2138 LabWorksheet.txt

File (Entity type)

A 27.7 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

geomx-rnaseq-with-probes-metadata.tsv

File (Entity type)

A 1.89 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

b9d28407fb5bc61152d2921132384fde-metadata.tsv

File (Entity type)

A 1.25 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

contributors.tsv

File (Entity type)

A 957 B file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

3115 pA M.ome.tiff

File (Entity type)

A 7.92 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

metadata.json

File (Entity type)

A 39.2 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.