HBM396.KGDR.538 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Subset Collection:

HBM496.TWCK.764

Collection (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

left kidney

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM396.KGDR.538

Has Time Series Data:0

Description:Periodic acid-Schiff Stained Microscopy collected from the Left Kidney of a 73 year old White Female donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Brightfield microscopy images of fresh-frozen tissue sections were collected with a Leica Biosystems SCN400. Support was provided by the NIH Common Fund and National Institute of Diabetes and Digestive and Kidney Diseases (U54 DK120058). Tissue was collected through the Cooperative Human Tissue Network with support provided by the NIH National Cancer Institute (5 UM1 CA183727-08).

Creation Time:2020-05-18 12:35:48.026000

Results found

Linked to

	Label	Description
	left kidney Anatomy (Entity type)	A kidney that is part of a left side of organism.
	HBM496.TWCK.764 Collection (Entity type)	A Collection from HuBMAP
	transform 01 VAN0003-LK-32-21-PAS rigid.txt File (Entity type)	A 781 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project
	PAS-metadata.tsv File (Entity type)	A 761 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project
	transform 00 VAN0003-LK-32-21-PAS initial.txt File (Entity type)	A 782 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project
	metadata.json File (Entity type)	A 43.3 KB file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project
	transform 02 VAN0003-LK-32-21-PAS affine.txt File (Entity type)	A 796 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project
	transform 04 VAN0003-LK-32-21-PAS append affine.txt File (Entity type)	A 795 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project
	VAN0003-LK-32-21-PAS registered.ome.tiff File (Entity type)	A 5.13 GB file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project
	transform 03 VAN0003-LK-32-21-PAS append rigid.txt File (Entity type)	A 783 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project

left kidney

Anatomy (Entity type)

A kidney that is part of a left side of organism.

HBM496.TWCK.764

Collection (Entity type)

A Collection from HuBMAP

transform 01 VAN0003-LK-32-21-PAS rigid.txt

File (Entity type)

A 781 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project

PAS-metadata.tsv

File (Entity type)

A 761 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project

transform 00 VAN0003-LK-32-21-PAS initial.txt

File (Entity type)

A 782 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project

metadata.json

File (Entity type)

A 43.3 KB file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project

transform 02 VAN0003-LK-32-21-PAS affine.txt

File (Entity type)

A 796 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project

transform 04 VAN0003-LK-32-21-PAS append affine.txt

File (Entity type)

A 795 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project

VAN0003-LK-32-21-PAS registered.ome.tiff

File (Entity type)

A 5.13 GB file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project

transform 03 VAN0003-LK-32-21-PAS append rigid.txt

File (Entity type)

A 783 B file from HuBMAP produced from OBI:0600020 as part of the Vanderbilt TMC project

DISPLAY PER PAGE

CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.