hmgc2 palatine tonsils (Collection)

Subset Collection:

hmgc2

Collection (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:This collection contains clusters of individual assembly annotations (refer "hmgi2" collection) from palatine_tonsils samples, which were generated using usearch v8.1.1861. Proteins were compared at a 90% identity cut-off and those overlapping were considered redundant and removed, resulting in a non-redundant catalog of bacterial proteins. Output is provided as an amino acid multifasta file.

Abbreviation:hmgc2_palatine_tonsils

Results found

Linked to

	Label	Description
	HHS 275382046 Subject (Entity type)	A subject produced as part of the HHS project
	SRS013947 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	HHS 857980665 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	SRS064482 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	HHS 765377934 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	hmgc-palatine tonsils-0.90-centroids.fa.bz2 File (Entity type)	A 71.7 MB file from HMP produced from OBI:0002623 as part of the HHS project
	HHS 953045535 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	SRS144424 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS077308 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	HHS 764467579 Subject (Entity type)	A subject from HMP produced as part of the HHS project

HHS 275382046

Subject (Entity type)

A subject produced as part of the HHS project

SRS013947

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

HHS 857980665

Subject (Entity type)

A subject from HMP produced as part of the HHS project

SRS064482

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

HHS 765377934

Subject (Entity type)

A subject from HMP produced as part of the HHS project

hmgc-palatine tonsils-0.90-centroids.fa.bz2

File (Entity type)

A 71.7 MB file from HMP produced from OBI:0002623 as part of the HHS project

HHS 953045535

Subject (Entity type)

A subject from HMP produced as part of the HHS project

SRS144424

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS077308

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

HHS 764467579

Subject (Entity type)

A subject from HMP produced as part of the HHS project

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.