SNT967.MXGP.682 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

sennet c2m2 jun26.zip

Processed File (Entity type)

Dcc:

SenNet

DCC (Entity type)

Anatomy:

adipose tissue

Anatomy (Entity type)

Persistent Id:https://doi.org/10.60586/SNT967.MXGP.682

Has Time Series Data:0

Description:Spatial transcriptomics with 10X Genomics Visium CytAssist performed on two human liver and one adipose formalin-fixed paraffin-embedded (FFPE) tissue samples. Slides were prepared with 5 µm and 10 µm tissue sections for liver and adipose, respectively. The 10X Genomics Visium CytAssist instrument was used for probe transfer to the 6.5 x 6.5 mm Visium CytAssist capture slides. Samples were processed according to the 10X Genomics Visium CytAssist Spatial Gene Expression for FFPE procedure with the Visium Human Transcriptome Probe Kit v2.

Creation Time:2024-10-04 17:52:56.936000

Results found

Linked to

	Label	Description
	V42L05-401 A1 S1 L002 R1 001.fastq.gz File (Entity type)	A 10.3 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L05-401 A1 S1 L002 R2 001.fastq.gz File (Entity type)	A 15.3 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	ome-tiff.channels.csv File (Entity type)	A 122 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	scRNAseq-visium-with-probes-metadata.tsv File (Entity type)	A 2.03 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L05-401 A1 alignment.json File (Entity type)	A 376 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	5de3949c587b3ad5410922d6a45a205b-metadata.tsv File (Entity type)	A 578 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	microscope hardware.json File (Entity type)	A 2.00 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	h-and-e-metadata.tsv File (Entity type)	A 947 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	contributors.tsv File (Entity type)	A 3.36 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L05-401 A1 fiducial.tiff File (Entity type)	A 3.28 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L05-401 A1 S1 L002 R1 001.fastq.gz

File (Entity type)

A 10.3 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L05-401 A1 S1 L002 R2 001.fastq.gz

File (Entity type)

A 15.3 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

ome-tiff.channels.csv

File (Entity type)

A 122 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

scRNAseq-visium-with-probes-metadata.tsv

File (Entity type)

A 2.03 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L05-401 A1 alignment.json

File (Entity type)

A 376 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

5de3949c587b3ad5410922d6a45a205b-metadata.tsv

File (Entity type)

A 578 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

microscope hardware.json

File (Entity type)

A 2.00 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

h-and-e-metadata.tsv

File (Entity type)

A 947 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

contributors.tsv

File (Entity type)

A 3.36 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L05-401 A1 fiducial.tiff

File (Entity type)

A 3.28 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

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