hmcarg2 (Collection)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:Assembled contig alignments to reference genomes: Contigs that resulted from assembly of whole metagenome sequencing reads from each sample were aligned to MetaRef reference genomes using Bowtie2. The result is a nucmer merged coordinates file per sample.

Abbreviation:hmcarg2

Results found

Linked to

	Label	Description
	SRS143895.tar.bz2 File (Entity type)	A 12.3 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS147727 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS143759 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS014923 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS062713.tar.bz2 File (Entity type)	A 446 KB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS048719.tar.bz2 File (Entity type)	A 4.85 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS147144 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS015921.tar.bz2 File (Entity type)	A 5.18 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS049744.tar.bz2 File (Entity type)	A 37.6 KB file from HMP produced from OBI:0002623 as part of the HHS project
	HHS 275382046 Subject (Entity type)	A subject from HMP produced as part of the HHS project

SRS143895.tar.bz2

File (Entity type)

A 12.3 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS147727

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS143759

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS014923

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS062713.tar.bz2

File (Entity type)

A 446 KB file from HMP produced from OBI:0002623 as part of the HHS project

SRS048719.tar.bz2

File (Entity type)

A 4.85 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS147144

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS015921.tar.bz2

File (Entity type)

A 5.18 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS049744.tar.bz2

File (Entity type)

A 37.6 KB file from HMP produced from OBI:0002623 as part of the HHS project

HHS 275382046

Subject (Entity type)

A subject from HMP produced as part of the HHS project

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CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.