HBM268.FSPK.489 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Subset Collection:

HBM284.FSBD.955

Collection (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

right kidney

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM268.FSPK.489

Has Time Series Data:0

Description:Autofluorescence Microscopy collected from the right kidney of a 48 year old White male donor by the Biomolecular Multimodal Imaging Center (BIOMIC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Autofluorescence images were collected with a Carl Zeiss microscopy AxioScan.Z1 using 3 channels/filters -- DAPI (excitation: 335-383 nm/emission: 420-470 nm), eGFP (excitation: 450-490 nm/emission: 500-550 nm), and dsRed (excitation: 538-562 nm/emission: 570-640 nm). Support was provided by the NIH Common Fund and National Institute of Diabetes and Digestive and Kidney Diseases (U54 DK120058). Tissue was collected through the Cooperative Human Tissue Network with support provided by the NIH National Cancer Institute (5 UM1 CA183727-08).

Creation Time:2020-05-18 12:35:59.168000

Results found

Linked to

	Label	Description
	right kidney Anatomy (Entity type)	A kidney that is part of a right side of organism.
	VAN0008-RK-403-100-AF preIMS registered.ome.tiff File (Entity type)	A 5.18 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	transform 02 VAN0008-RK-403-100-AF preIMS affine.txt File (Entity type)	A 793 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	AF-metadata.tsv File (Entity type)	A 679 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	transform 01 VAN0008-RK-403-100-AF preIMS rigid.txt File (Entity type)	A 781 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	transform 00 VAN0008-RK-403-100-AF preIMS initial.txt File (Entity type)	A 782 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	metadata.json File (Entity type)	A 41.5 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	HBM284.FSBD.955 Collection (Entity type)	A Collection from HuBMAP
	VAN0008-RK-403-100-AF preIMS unregistered.czi File (Entity type)	A 994 MB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	VAN0008-RK-403-100-AF preIMS meta unregistered.xml File (Entity type)	A 245 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

right kidney

Anatomy (Entity type)

A kidney that is part of a right side of organism.

VAN0008-RK-403-100-AF preIMS registered.ome.tiff

File (Entity type)

A 5.18 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

transform 02 VAN0008-RK-403-100-AF preIMS affine.txt

File (Entity type)

A 793 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

AF-metadata.tsv

File (Entity type)

A 679 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

transform 01 VAN0008-RK-403-100-AF preIMS rigid.txt

File (Entity type)

A 781 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

transform 00 VAN0008-RK-403-100-AF preIMS initial.txt

File (Entity type)

A 782 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

metadata.json

File (Entity type)

A 41.5 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

HBM284.FSBD.955

Collection (Entity type)

A Collection from HuBMAP

VAN0008-RK-403-100-AF preIMS unregistered.czi

File (Entity type)

A 994 MB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

VAN0008-RK-403-100-AF preIMS meta unregistered.xml

File (Entity type)

A 245 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

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