SNT355.CFGL.684 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

sennet c2m2 jun26.zip

Processed File (Entity type)

Dcc:

SenNet

DCC (Entity type)

Anatomy:

adipose tissue

Anatomy (Entity type)

Persistent Id:https://doi.org/10.60586/SNT355.CFGL.684

Has Time Series Data:0

Description:This dataset was generated using the 10x Genomics Visium Spatial Gene Expression assay on a 10-μm section of fresh frozen subcutaneous white adipose tissue resected during bariatric surgery on a high-BMI (39.67) female aged 42 years. Age- and obesity-related dysfunction of adipose tissue has been linked to cellular senescence, systemic inflammation, and metabolic disease. Much remains to be discovered, however, about the spatial distribution of senescence-associated niches in human adipose tissue. 2- and 3-dimensional characterization of senescence is aided by the use of spatial omics advances such as Visium, which allows whole-transcriptome spatial profiling of RNA from tissues with 55-μm resolution. In situ reverse transcription generates cDNA molecules in the tissue, which are released, captured, and extended on spatially-barcoded oligonucleotide spots on the glass slide beneath the tissue. Barcoded cDNA is used to generate sequencing libraries, reads from which can be spatially mapped to the overlaid tissue area where each read originated.

Creation Time:2024-03-19 13:10:12.561000

Results found

Linked to

	Label	Description
	V11D13-034-B1 S2 L002 R2 001.fastq.gz File (Entity type)	A 8.34 GB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project
	V11D13-034-B1 S2 L002 R1 001.fastq.gz File (Entity type)	A 3.66 GB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project
	h-and-e-metadata.tsv File (Entity type)	A 947 B file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project
	SNT355.CFGL.684 V11D13-034-B1.json File (Entity type)	A 541 KB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project
	V11D13-034 B1.ome.tiff File (Entity type)	A 1.16 GB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project
	5d0823d375ea1faceb12b6d1507677fe-metadata.tsv File (Entity type)	A 587 B file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project
	scRNAseq-10xGenomics-v3-metadata.tsv File (Entity type)	A 1.76 KB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project
	metadata.json File (Entity type)	A 102 KB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project
	V11D13-034.gpr File (Entity type)	A 991 KB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project
	microscope hardware.json File (Entity type)	A 2.00 B file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

V11D13-034-B1 S2 L002 R2 001.fastq.gz

File (Entity type)

A 8.34 GB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

V11D13-034-B1 S2 L002 R1 001.fastq.gz

File (Entity type)

A 3.66 GB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

h-and-e-metadata.tsv

File (Entity type)

A 947 B file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

SNT355.CFGL.684 V11D13-034-B1.json

File (Entity type)

A 541 KB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

V11D13-034 B1.ome.tiff

File (Entity type)

A 1.16 GB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

5d0823d375ea1faceb12b6d1507677fe-metadata.tsv

File (Entity type)

A 587 B file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

scRNAseq-10xGenomics-v3-metadata.tsv

File (Entity type)

A 1.76 KB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

metadata.json

File (Entity type)

A 102 KB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

V11D13-034.gpr

File (Entity type)

A 991 KB file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

microscope hardware.json

File (Entity type)

A 2.00 B file from SenNet produced from OBI:0002631 as part of the TMC University of Minnesota Niedernhofer project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

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CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

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